Analysis of interatomic Contacts of Structural Units in PDB entry:
4YB7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4YB7 entry

There are 12 chains in PDB entry 4YB7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASN 4	LYS 299
C	ASN 4	LYS 299
D	ASN 4	LYS 299
E	THR 5	LYS 299
I	ASN 4	LYS 299
K	ASN 4	LYS 299
A	ASN 4	LYS 299
F	ASN 4	LYS 299
G	THR 5	LYS 299
H	ASN 4	LYS 299
J	ASN 4	LYS 299
L	THR 5	LYS 299

There are132 helices in PDB entry 4YB7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	17	28	Right-handed alpha
Helix 2	AA2	B	54	56	Right-handed 310
Helix 3	AA3	B	57	64	Right-handed alpha
Helix 4	AA4	B	74	87	Right-handed alpha
Helix 5	AA5	B	118	123	Right-handed 310
Helix 6	AA6	B	131	142	Right-handed alpha
Helix 7	AA7	B	154	158	Right-handed 310
Helix 8	AA8	B	174	180	Right-handed alpha
Helix 9	AA9	B	203	226	Right-handed alpha
Helix 10	AB1	B	237	245	Right-handed alpha
Helix 11	AB2	B	274	284	Right-handed alpha
Helix 12	AB3	C	17	28	Right-handed alpha
Helix 13	AB4	C	54	56	Right-handed 310
Helix 14	AB5	C	57	64	Right-handed alpha
Helix 15	AB6	C	74	87	Right-handed alpha
Helix 16	AB7	C	118	123	Right-handed 310
Helix 17	AB8	C	131	142	Right-handed alpha
Helix 18	AB9	C	154	158	Right-handed 310
Helix 19	AC1	C	174	180	Right-handed alpha
Helix 20	AC2	C	203	226	Right-handed alpha
Helix 21	AC3	C	237	245	Right-handed alpha
Helix 22	AC4	C	274	284	Right-handed alpha
Helix 23	AC5	D	17	28	Right-handed alpha
Helix 24	AC6	D	54	56	Right-handed 310
Helix 25	AC7	D	57	64	Right-handed alpha
Helix 26	AC8	D	74	87	Right-handed alpha
Helix 27	AC9	D	118	123	Right-handed 310
Helix 28	AD1	D	131	142	Right-handed alpha
Helix 29	AD2	D	154	158	Right-handed 310
Helix 30	AD3	D	174	180	Right-handed alpha
Helix 31	AD4	D	203	226	Right-handed alpha
Helix 32	AD5	D	237	245	Right-handed alpha
Helix 33	AD6	D	274	284	Right-handed alpha
Helix 34	AD7	E	17	28	Right-handed alpha
Helix 35	AD8	E	54	56	Right-handed 310
Helix 36	AD9	E	57	64	Right-handed alpha
Helix 37	AE1	E	74	87	Right-handed alpha
Helix 38	AE2	E	118	123	Right-handed 310
Helix 39	AE3	E	131	142	Right-handed alpha
Helix 40	AE4	E	154	158	Right-handed 310
Helix 41	AE5	E	174	180	Right-handed alpha
Helix 42	AE6	E	203	226	Right-handed alpha
Helix 43	AE7	E	237	245	Right-handed alpha
Helix 44	AE8	E	274	284	Right-handed alpha
Helix 45	AE9	I	17	28	Right-handed alpha
Helix 46	AF1	I	54	56	Right-handed 310
Helix 47	AF2	I	57	64	Right-handed alpha
Helix 48	AF3	I	74	87	Right-handed alpha
Helix 49	AF4	I	119	123	Right-handed 310
Helix 50	AF5	I	131	142	Right-handed alpha
Helix 51	AF6	I	154	158	Right-handed 310
Helix 52	AF7	I	174	180	Right-handed alpha
Helix 53	AF8	I	203	226	Right-handed alpha
Helix 54	AF9	I	237	245	Right-handed alpha
Helix 55	AG1	I	274	284	Right-handed alpha
Helix 56	AG2	K	17	28	Right-handed alpha
Helix 57	AG3	K	54	56	Right-handed 310
Helix 58	AG4	K	57	64	Right-handed alpha
Helix 59	AG5	K	74	87	Right-handed alpha
Helix 60	AG6	K	118	123	Right-handed 310
Helix 61	AG7	K	131	142	Right-handed alpha
Helix 62	AG8	K	154	158	Right-handed 310
Helix 63	AG9	K	174	180	Right-handed alpha
Helix 64	AH1	K	203	226	Right-handed alpha
Helix 65	AH2	K	237	245	Right-handed alpha
Helix 66	AH3	K	274	284	Right-handed alpha
Helix 67	AH4	A	17	28	Right-handed alpha
Helix 68	AH5	A	54	56	Right-handed 310
Helix 69	AH6	A	57	64	Right-handed alpha
Helix 70	AH7	A	74	87	Right-handed alpha
Helix 71	AH8	A	118	123	Right-handed 310
Helix 72	AH9	A	131	142	Right-handed alpha
Helix 73	AI1	A	154	158	Right-handed 310
Helix 74	AI2	A	174	180	Right-handed alpha
Helix 75	AI3	A	203	226	Right-handed alpha
Helix 76	AI4	A	237	245	Right-handed alpha
Helix 77	AI5	A	274	284	Right-handed alpha
Helix 78	AI6	F	17	28	Right-handed alpha
Helix 79	AI7	F	54	56	Right-handed 310
Helix 80	AI8	F	57	64	Right-handed alpha
Helix 81	AI9	F	74	87	Right-handed alpha
Helix 82	AJ1	F	118	123	Right-handed 310
Helix 83	AJ2	F	131	142	Right-handed alpha
Helix 84	AJ3	F	154	158	Right-handed 310
Helix 85	AJ4	F	174	180	Right-handed alpha
Helix 86	AJ5	F	203	226	Right-handed alpha
Helix 87	AJ6	F	237	245	Right-handed alpha
Helix 88	AJ7	F	274	284	Right-handed alpha
Helix 89	AJ8	G	17	28	Right-handed alpha
Helix 90	AJ9	G	54	56	Right-handed 310
Helix 91	AK1	G	57	64	Right-handed alpha
Helix 92	AK2	G	74	87	Right-handed alpha
Helix 93	AK3	G	118	123	Right-handed 310
Helix 94	AK4	G	131	142	Right-handed alpha
Helix 95	AK5	G	154	158	Right-handed 310
Helix 96	AK6	G	174	180	Right-handed alpha
Helix 97	AK7	G	203	226	Right-handed alpha
Helix 98	AK8	G	237	245	Right-handed alpha
Helix 99	AK9	G	274	284	Right-handed alpha
Helix 100	AL1	H	17	28	Right-handed alpha
Helix 101	AL2	H	54	56	Right-handed 310
Helix 102	AL3	H	57	64	Right-handed alpha
Helix 103	AL4	H	74	87	Right-handed alpha
Helix 104	AL5	H	118	123	Right-handed 310
Helix 105	AL6	H	131	142	Right-handed alpha
Helix 106	AL7	H	154	158	Right-handed 310
Helix 107	AL8	H	174	180	Right-handed alpha
Helix 108	AL9	H	203	226	Right-handed alpha
Helix 109	AM1	H	237	245	Right-handed alpha
Helix 110	AM2	H	274	284	Right-handed alpha
Helix 111	AM3	J	17	28	Right-handed alpha
Helix 112	AM4	J	54	56	Right-handed 310
Helix 113	AM5	J	57	64	Right-handed alpha
Helix 114	AM6	J	74	87	Right-handed alpha
Helix 115	AM7	J	118	123	Right-handed 310
Helix 116	AM8	J	131	142	Right-handed alpha
Helix 117	AM9	J	154	158	Right-handed 310
Helix 118	AN1	J	174	180	Right-handed alpha
Helix 119	AN2	J	203	226	Right-handed alpha
Helix 120	AN3	J	237	245	Right-handed alpha
Helix 121	AN4	J	274	284	Right-handed alpha
Helix 122	AN5	L	17	28	Right-handed alpha
Helix 123	AN6	L	54	56	Right-handed 310
Helix 124	AN7	L	57	64	Right-handed alpha
Helix 125	AN8	L	74	87	Right-handed alpha
Helix 126	AN9	L	118	123	Right-handed 310
Helix 127	AO1	L	131	142	Right-handed alpha
Helix 128	AO2	L	154	158	Right-handed 310
Helix 129	AO3	L	174	180	Right-handed alpha
Helix 130	AO4	L	203	226	Right-handed alpha
Helix 131	AO5	L	237	245	Right-handed alpha
Helix 132	AO6	L	274	284	Right-handed alpha

There are 36 sheets in PDB entry 4YB7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	42	first strand
Strand 2	B	48	53	anti-parallel
Strand 3	B	7	12	parallel
Strand 4	B	69	73	parallel
Strand 5	B	193	198	anti-parallel
Strand 6	B	93	98	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	150	first strand
Strand 2	B	126	129	parallel
Strand 3	B	166	171	parallel
Strand 4	B	104	111	anti-parallel
Strand 5	B	182	191	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	256	first strand
Strand 2	B	259	268	anti-parallel
Strand 3	B	227	234	anti-parallel
Strand 4	B	287	293	anti-parallel
Strand 5	E	296	298	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	298	first strand
Strand 2	D	287	293	anti-parallel
Strand 3	D	227	234	anti-parallel
Strand 4	D	262	268	anti-parallel
Strand 5	D	252	255	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	42	first strand
Strand 2	C	48	53	anti-parallel
Strand 3	C	7	12	parallel
Strand 4	C	69	73	parallel
Strand 5	C	193	198	anti-parallel
Strand 6	C	93	98	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	150	first strand
Strand 2	C	126	129	parallel
Strand 3	C	166	171	parallel
Strand 4	C	104	111	anti-parallel
Strand 5	C	182	191	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	255	first strand
Strand 2	C	262	268	anti-parallel
Strand 3	C	227	234	anti-parallel
Strand 4	C	287	293	anti-parallel
Strand 5	I	296	298	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	298	first strand
Strand 2	K	287	293	anti-parallel
Strand 3	K	227	234	anti-parallel
Strand 4	K	259	268	anti-parallel
Strand 5	K	252	256	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	42	first strand
Strand 2	D	48	53	anti-parallel
Strand 3	D	7	12	parallel
Strand 4	D	69	73	parallel
Strand 5	D	193	198	anti-parallel
Strand 6	D	93	98	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	150	first strand
Strand 2	D	126	129	parallel
Strand 3	D	166	171	parallel
Strand 4	D	104	111	anti-parallel
Strand 5	D	182	191	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	296	298	first strand
Strand 2	E	287	293	anti-parallel
Strand 3	E	227	234	anti-parallel
Strand 4	E	259	268	anti-parallel
Strand 5	E	252	256	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	42	first strand
Strand 2	E	48	53	anti-parallel
Strand 3	E	7	12	parallel
Strand 4	E	69	73	parallel
Strand 5	E	193	198	anti-parallel
Strand 6	E	93	98	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	150	first strand
Strand 2	E	126	129	parallel
Strand 3	E	166	171	parallel
Strand 4	E	104	111	anti-parallel
Strand 5	E	182	191	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	40	42	first strand
Strand 2	I	48	53	anti-parallel
Strand 3	I	7	12	parallel
Strand 4	I	69	73	parallel
Strand 5	I	193	198	anti-parallel
Strand 6	I	93	98	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	147	150	first strand
Strand 2	I	126	129	parallel
Strand 3	I	166	171	parallel
Strand 4	I	104	111	anti-parallel
Strand 5	I	182	191	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	252	256	first strand
Strand 2	I	259	268	anti-parallel
Strand 3	I	227	234	anti-parallel
Strand 4	I	287	293	anti-parallel
Strand 5	K	296	298	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	40	42	first strand
Strand 2	K	48	53	anti-parallel
Strand 3	K	7	12	parallel
Strand 4	K	69	73	parallel
Strand 5	K	193	198	anti-parallel
Strand 6	K	93	98	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	147	150	first strand
Strand 2	K	126	129	parallel
Strand 3	K	166	171	parallel
Strand 4	K	104	111	anti-parallel
Strand 5	K	182	191	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	42	first strand
Strand 2	A	48	53	anti-parallel
Strand 3	A	7	12	parallel
Strand 4	A	69	73	parallel
Strand 5	A	193	198	anti-parallel
Strand 6	A	93	98	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	150	first strand
Strand 2	A	126	129	parallel
Strand 3	A	166	171	parallel
Strand 4	A	104	111	anti-parallel
Strand 5	A	182	191	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	256	first strand
Strand 2	A	259	268	anti-parallel
Strand 3	A	227	234	anti-parallel
Strand 4	A	287	293	anti-parallel
Strand 5	J	296	298	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	298	first strand
Strand 2	G	287	293	anti-parallel
Strand 3	G	227	234	anti-parallel
Strand 4	G	262	268	anti-parallel
Strand 5	G	252	255	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	42	first strand
Strand 2	F	48	53	anti-parallel
Strand 3	F	7	12	parallel
Strand 4	F	69	73	parallel
Strand 5	F	193	198	anti-parallel
Strand 6	F	93	98	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	147	150	first strand
Strand 2	F	126	129	parallel
Strand 3	F	166	171	parallel
Strand 4	F	104	111	anti-parallel
Strand 5	F	182	191	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	252	255	first strand
Strand 2	F	262	268	anti-parallel
Strand 3	F	227	234	anti-parallel
Strand 4	F	287	293	anti-parallel
Strand 5	H	296	298	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	296	298	first strand
Strand 2	L	287	293	anti-parallel
Strand 3	L	227	234	anti-parallel
Strand 4	L	259	268	anti-parallel
Strand 5	L	252	256	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	40	42	first strand
Strand 2	G	48	53	anti-parallel
Strand 3	G	7	12	parallel
Strand 4	G	69	73	parallel
Strand 5	G	193	198	anti-parallel
Strand 6	G	93	98	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	147	150	first strand
Strand 2	G	126	129	parallel
Strand 3	G	166	171	parallel
Strand 4	G	104	111	anti-parallel
Strand 5	G	182	191	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	296	298	first strand
Strand 2	J	287	293	anti-parallel
Strand 3	J	227	234	anti-parallel
Strand 4	J	259	268	anti-parallel
Strand 5	J	252	256	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	40	42	first strand
Strand 2	H	48	53	anti-parallel
Strand 3	H	7	12	parallel
Strand 4	H	69	73	parallel
Strand 5	H	193	198	anti-parallel
Strand 6	H	93	98	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	147	150	first strand
Strand 2	H	126	129	parallel
Strand 3	H	166	171	parallel
Strand 4	H	104	111	anti-parallel
Strand 5	H	182	191	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	252	256	first strand
Strand 2	H	259	268	anti-parallel
Strand 3	H	227	234	anti-parallel
Strand 4	H	287	293	anti-parallel
Strand 5	L	296	298	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	40	42	first strand
Strand 2	J	48	53	anti-parallel
Strand 3	J	7	12	parallel
Strand 4	J	69	73	parallel
Strand 5	J	193	198	anti-parallel
Strand 6	J	93	98	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	147	150	first strand
Strand 2	J	126	129	parallel
Strand 3	J	166	171	parallel
Strand 4	J	104	111	anti-parallel
Strand 5	J	182	191	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	40	42	first strand
Strand 2	L	48	53	anti-parallel
Strand 3	L	7	12	parallel
Strand 4	L	69	73	parallel
Strand 5	L	193	198	anti-parallel
Strand 6	L	93	98	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	147	150	first strand
Strand 2	L	126	129	parallel
Strand 3	L	166	171	parallel
Strand 4	L	104	111	anti-parallel
Strand 5	L	182	191	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4YB7

Analysis of interatomic Contacts of Structural Units in PDB entry:
4YB7