Analysis of interatomic Contacts of Structural Units in PDB entry:
4YE5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4YE5 entry

There are 2 chains in PDB entry 4YE5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 55	TRP 600
B	SER 55	TRP 600

There are 43 helices in PDB entry 4YE5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	89	96	Right-handed alpha
Helix 2	AA2	A	120	134	Right-handed alpha
Helix 3	AA3	A	136	144	Right-handed alpha
Helix 4	AA4	A	158	167	Right-handed alpha
Helix 5	AA5	A	190	195	Right-handed alpha
Helix 6	AA6	A	206	211	Right-handed alpha
Helix 7	AA7	A	211	217	Right-handed alpha
Helix 8	AA8	A	254	273	Right-handed alpha
Helix 9	AA9	A	302	308	Right-handed alpha
Helix 10	AB1	A	310	315	Right-handed alpha
Helix 11	AB2	A	319	322	Right-handed 310
Helix 12	AB3	A	323	334	Right-handed alpha
Helix 13	AB4	A	369	375	Right-handed alpha
Helix 14	AB5	A	377	385	Right-handed alpha
Helix 15	AB6	A	389	400	Right-handed alpha
Helix 16	AB7	A	420	424	Right-handed 310
Helix 17	AB8	A	427	432	Right-handed alpha
Helix 18	AB9	A	433	435	Right-handed 310
Helix 19	AC1	A	441	454	Right-handed alpha
Helix 20	AC2	A	488	505	Right-handed alpha
Helix 21	AC3	A	564	567	Right-handed 310
Helix 22	AC4	A	568	584	Right-handed alpha
Helix 23	AC5	B	89	96	Right-handed alpha
Helix 24	AC6	B	120	134	Right-handed alpha
Helix 25	AC7	B	136	144	Right-handed alpha
Helix 26	AC8	B	158	167	Right-handed alpha
Helix 27	AC9	B	190	195	Right-handed alpha
Helix 28	AD1	B	206	211	Right-handed alpha
Helix 29	AD2	B	211	216	Right-handed alpha
Helix 30	AD3	B	254	273	Right-handed alpha
Helix 31	AD4	B	302	308	Right-handed alpha
Helix 32	AD5	B	310	315	Right-handed alpha
Helix 33	AD6	B	319	322	Right-handed 310
Helix 34	AD7	B	323	335	Right-handed alpha
Helix 35	AD8	B	368	375	Right-handed alpha
Helix 36	AD9	B	377	385	Right-handed alpha
Helix 37	AE1	B	389	399	Right-handed alpha
Helix 38	AE2	B	420	424	Right-handed 310
Helix 39	AE3	B	430	435	Right-handed 310
Helix 40	AE4	B	441	454	Right-handed alpha
Helix 41	AE5	B	488	505	Right-handed alpha
Helix 42	AE6	B	564	567	Right-handed 310
Helix 43	AE7	B	568	584	Right-handed alpha

There are 15 sheets in PDB entry 4YE5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	62	first strand
Strand 2	A	220	225	anti-parallel
Strand 3	A	236	241	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	183	first strand
Strand 2	A	76	80	anti-parallel
Strand 3	A	69	70	anti-parallel
Strand 4	A	248	251	parallel
Strand 5	A	464	468	anti-parallel
Strand 6	A	474	476	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	157	first strand
Strand 2	A	84	88	anti-parallel
Strand 3	A	174	178	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	197	first strand
Strand 2	A	203	205	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	294	first strand
Strand 2	A	276	283	anti-parallel
Strand 3	A	551	558	anti-parallel
Strand 4	A	535	544	anti-parallel
Strand 5	A	518	526	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	345	first strand
Strand 2	A	365	368	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	351	first strand
Strand 2	A	354	357	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	458	first strand
Strand 2	A	484	485	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	62	first strand
Strand 2	B	220	224	anti-parallel
Strand 3	B	237	241	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	183	first strand
Strand 2	B	76	80	anti-parallel
Strand 3	B	69	70	anti-parallel
Strand 4	B	248	251	parallel
Strand 5	B	464	468	anti-parallel
Strand 6	B	474	476	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	157	first strand
Strand 2	B	84	88	anti-parallel
Strand 3	B	174	177	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	197	first strand
Strand 2	B	203	205	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	218	first strand
Strand 2	B	244	245	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	294	first strand
Strand 2	B	277	283	anti-parallel
Strand 3	B	551	558	anti-parallel
Strand 4	B	535	544	anti-parallel
Strand 5	B	518	526	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	458	first strand
Strand 2	B	484	485	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4YE5

Analysis of interatomic Contacts of Structural Units in PDB entry:
4YE5