Analysis of interatomic Contacts of Structural Units in PDB entry:
4YE9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YE9 entry

There is 1 chain in PDB entry 4YE9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0ASP 771
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 4YE9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 12Right-handed alpha
Helix 2
AA2
A
16 26Right-handed alpha
Helix 3
AA3
A
26 45Right-handed alpha
Helix 4
AA4
A
49 61Right-handed alpha
Helix 5
AA5
A
68 78Right-handed alpha
Helix 6
AA6
A
83 97Right-handed alpha
Helix 7
AA7
A
103 110Right-handed alpha
Helix 8
AA8
A
118 132Right-handed alpha
Helix 9
AA9
A
133 141Right-handed alpha
Helix 10
AB1
A
142 145Right-handed 310
Helix 11
AB2
A
146 157Right-handed alpha
Helix 12
AB3
A
161 178Right-handed alpha
Helix 13
AB4
A
219 224Right-handed alpha
Helix 14
AB5
A
225 229Right-handed 310
Helix 15
AB6
A
236 240Right-handed 310
Helix 16
AB7
A
248 261Right-handed alpha
Helix 17
AB8
A
279 294Right-handed alpha
Helix 18
AB9
A
311 325Right-handed alpha
Helix 19
AC1
A
338 352Right-handed alpha
Helix 20
AC2
A
379 392Right-handed alpha
Helix 21
AC3
A
437 449Right-handed alpha
Helix 22
AC4
A
463 474Right-handed alpha
Helix 23
AC5
A
495 503Right-handed alpha
Helix 24
AC6
A
518 526Right-handed alpha
Helix 25
AC7
A
528 537Right-handed alpha
Helix 26
AC8
A
550 565Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 4YE9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 268first strand
Strand 2
A
297 302parallel
Strand 3
A
331 334parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 358first strand
Strand 2
A
401 404anti-parallel
Strand 3
A
416 420anti-parallel
Strand 4
A
434 436anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 457first strand
Strand 2
A
480 484parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 489first strand
Strand 2
A
547 548parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
567 568first strand
Strand 2
A
740 743parallel
Strand 3
A
747 751anti-parallel
Strand 4
A
761 766anti-parallel
Strand 5
A
685 692parallel
Strand 6
A
720 728anti-parallel
Strand 7
A
570 571anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
613 614first strand
Strand 2
A
575 578anti-parallel
Strand 3
A
661 662parallel
Strand 4
A
649 650anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 593first strand
Strand 2
A
603 606anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il