Analysis of interatomic Contacts of Structural Units in PDB entry:
4YEB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YEB entry

There are 2 chains in PDB entry 4YEB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 200PRO 468
B
 SER 30ALA 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 4YEB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
255 262Right-handed alpha
Helix 2
AA2
B
120 126Right-handed alpha
Helix 3
AA3
B
191 196Right-handed alpha
Helix 4
AA4
B
263 268Right-handed 310
Helix 5
AA5
B
313 320Right-handed alpha
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There are 7 sheets in PDB entry 4YEB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 218first strand
Strand 2
A
451 460anti-parallel
Strand 3
A
443 448anti-parallel
Strand 4
A
432 434anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 218first strand
Strand 2
A
451 460anti-parallel
Strand 3
A
443 448anti-parallel
Strand 4
A
437 438anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 227first strand
Strand 2
A
237 241anti-parallel
Strand 3
A
249 253anti-parallel
Strand 4
A
266 269anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 282first strand
Strand 2
A
285 289anti-parallel
Strand 3
A
295 300anti-parallel
Strand 4
A
305 311anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 336first strand
Strand 2
A
339 345anti-parallel
Strand 3
A
352 358anti-parallel
Strand 4
A
365 374anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 383first strand
Strand 2
A
387 392anti-parallel
Strand 3
A
406 412anti-parallel
Strand 4
A
418 424anti-parallel
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There are 14 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
41 43anti-parallel
Strand 3
B
62 64parallel
Strand 4
B
87 89parallel
Strand 5
B
108 110parallel
Strand 6
B
132 134parallel
Strand 7
B
158 160parallel
Strand 8
B
179 181parallel
Strand 9
B
203 205parallel
Strand 10
B
229 231parallel
Strand 11
B
251 253parallel
Strand 12
B
275 277parallel
Strand 13
B
299 301parallel
Strand 14
B
329 330parallel
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