Analysis of interatomic Contacts of Structural Units in PDB entry:
4YES


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YES entry

There are 4 chains in PDB entry 4YES (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 332ILE 360
B
 ILE 364GLU 622
H
 ASP 55GLU 62
H
 LEU 64GLN 65
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 4YES. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
342 346Right-handed 310
Helix 2
AA2
A
351 359Right-handed alpha
Helix 3
AA3
B
404 407Right-handed 310
Helix 4
AA4
B
411 414Right-handed 310
Helix 5
AA5
B
418 420Right-handed 310
Helix 6
AA6
B
485 493Right-handed alpha
Helix 7
AA7
B
532 539Right-handed alpha
Helix 8
AA8
B
554 558Right-handed 310
Helix 9
AA9
B
609 621Right-handed alpha
Helix 10
AB1
H
60 65Right-handed alpha
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There are 3 sheets in PDB entry 4YES. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 369first strand
Strand 2
B
524 529anti-parallel
Strand 3
B
498 503anti-parallel
Strand 4
B
571 575anti-parallel
Strand 5
B
582 590anti-parallel
Strand 6
B
601 605anti-parallel
Strand 7
B
548 551anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
378 383first strand
Strand 2
B
388 395anti-parallel
Strand 3
B
400 403anti-parallel
Strand 4
B
464 468anti-parallel
Strand 5
B
440 449anti-parallel
Strand 6
B
422 426anti-parallel
Strand 7
B
378 383anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
409 410first strand
Strand 2
B
415 416anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il