Analysis of interatomic Contacts of Structural Units in PDB entry:
4YF1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YF1 entry

There are 4 chains in PDB entry 4YF1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 21LYS 179
B
 LYS 19LYS 180
C
 SER 27LYS 180
D
 SER 27LYS 180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 39 helices in PDB entry 4YF1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 39Right-handed alpha
Helix 2
AA2
A
42 58Right-handed alpha
Helix 3
AA3
A
61 70Right-handed alpha
Helix 4
AA4
A
70 81Right-handed alpha
Helix 5
AA5
A
87 102Right-handed alpha
Helix 6
AA6
A
103 126Right-handed alpha
Helix 7
AA7
A
131 136Right-handed alpha
Helix 8
AA8
A
139 154Right-handed alpha
Helix 9
AA9
A
159 163Right-handed 310
Helix 10
AB1
A
164 178Right-handed alpha
Helix 11
AB2
B
27 39Right-handed alpha
Helix 12
AB3
B
42 58Right-handed alpha
Helix 13
AB4
B
61 70Right-handed alpha
Helix 14
AB5
B
70 80Right-handed alpha
Helix 15
AB6
B
87 102Right-handed alpha
Helix 16
AB7
B
103 125Right-handed alpha
Helix 17
AB8
B
131 136Right-handed 310
Helix 18
AB9
B
139 154Right-handed alpha
Helix 19
AC1
B
159 163Right-handed 310
Helix 20
AC2
B
164 178Right-handed alpha
Helix 21
AC3
C
28 39Right-handed alpha
Helix 22
AC4
C
42 59Right-handed alpha
Helix 23
AC5
C
61 70Right-handed alpha
Helix 24
AC6
C
70 79Right-handed alpha
Helix 25
AC7
C
87 102Right-handed alpha
Helix 26
AC8
C
103 127Right-handed alpha
Helix 27
AC9
C
139 154Right-handed alpha
Helix 28
AD1
C
159 163Right-handed 310
Helix 29
AD2
C
164 178Right-handed alpha
Helix 30
AD3
D
28 39Right-handed alpha
Helix 31
AD4
D
42 59Right-handed alpha
Helix 32
AD5
D
61 70Right-handed alpha
Helix 33
AD6
D
70 78Right-handed alpha
Helix 34
AD7
D
87 102Right-handed alpha
Helix 35
AD8
D
103 126Right-handed alpha
Helix 36
AD9
D
131 135Right-handed 310
Helix 37
AE1
D
139 154Right-handed alpha
Helix 38
AE2
D
159 163Right-handed 310
Helix 39
AE3
D
164 178Right-handed alpha
Back to top of page
There are no sheets in PDB entry 4YF1
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il