Analysis of interatomic Contacts of Structural Units in PDB entry:
4YG8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YG8 entry

There are 2 chains in PDB entry 4YG8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 UNK 4SER 285
B
 GLY 31THR 743
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 4YG8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 76Right-handed alpha
Helix 2
AA2
A
182 186Right-handed 310
Helix 3
AA3
A
188 199Right-handed alpha
Helix 4
AA4
A
226 235Right-handed alpha
Helix 5
AA5
A
242 251Right-handed alpha
Helix 6
AA6
A
257 261Right-handed 310
Helix 7
AA7
A
265 273Right-handed 310
Helix 8
AA8
A
278 285Right-handed alpha
Helix 9
AA9
B
32 42Right-handed alpha
Helix 10
AB1
B
52 68Right-handed alpha
Helix 11
AB2
B
106 119Right-handed alpha
Helix 12
AB3
B
172 192Right-handed alpha
Helix 13
AB4
B
193 197Right-handed 310
Helix 14
AB5
B
211 226Right-handed alpha
Helix 15
AB6
B
227 233Right-handed 310
Helix 16
AB7
B
248 260Right-handed alpha
Helix 17
AB8
B
261 263Right-handed 310
Helix 18
AB9
B
264 279Right-handed alpha
Helix 19
AC1
B
282 295Right-handed alpha
Helix 20
AC2
B
297 299Right-handed 310
Helix 21
AC3
B
300 321Right-handed alpha
Helix 22
AC4
B
326 350Right-handed alpha
Helix 23
AC5
B
352 367Right-handed alpha
Helix 24
AC6
B
370 384Right-handed alpha
Helix 25
AC7
B
386 397Right-handed alpha
Helix 26
AC8
B
434 445Right-handed alpha
Helix 27
AC9
B
449 456Right-handed alpha
Helix 28
AD1
B
472 477Right-handed alpha
Helix 29
AD2
B
488 493Right-handed 310
Helix 30
AD3
B
499 505Right-handed alpha
Helix 31
AD4
B
508 514Right-handed alpha
Helix 32
AD5
B
522 554Right-handed alpha
Helix 33
AD6
B
583 602Right-handed alpha
Helix 34
AD7
B
612 626Right-handed alpha
Helix 35
AD8
B
628 641Right-handed alpha
Helix 36
AD9
B
645 658Right-handed alpha
Helix 37
AE1
B
670 688Right-handed alpha
Helix 38
AE2
B
693 708Right-handed alpha
Helix 39
AE3
B
708 718Right-handed alpha
Helix 40
AE4
B
723 741Right-handed alpha
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There are 6 sheets in PDB entry 4YG8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
19 21anti-parallel
Strand 3
A
6 11anti-parallel
Strand 4
A
44 47anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 89first strand
Strand 2
A
94 98anti-parallel
Strand 3
A
131 134anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 114first strand
Strand 2
A
142 151anti-parallel
Strand 3
A
154 164anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 178first strand
Strand 2
A
214 216parallel
Strand 3
A
239 240parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 169first strand
Strand 2
B
155 160anti-parallel
Strand 3
B
143 149anti-parallel
Strand 4
B
126 138anti-parallel
Strand 5
B
78 85anti-parallel
Strand 6
B
91 99anti-parallel
Strand 7
B
202 203parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 169first strand
Strand 2
B
155 160anti-parallel
Strand 3
B
143 149anti-parallel
Strand 4
B
126 138anti-parallel
Strand 5
B
78 85anti-parallel
Strand 6
B
91 99anti-parallel
Strand 7
B
45 47anti-parallel
Strand 8
B
461 462anti-parallel
Strand 9
B
457 458anti-parallel
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