Analysis of interatomic Contacts of Structural Units in PDB entry:
4YGU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YGU entry

There are 4 chains in PDB entry 4YGU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 30GLY 206
B
 SER 30GLY 206
C
 LYS 28GLY 206
D
 LYS 28GLY 206
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 4 helices in PDB entry 4YGU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 70Right-handed alpha
Helix 2
AA2
B
64 70Right-handed alpha
Helix 3
AA3
C
64 70Right-handed alpha
Helix 4
AA4
D
64 70Right-handed alpha
Back to top of page

There are 11 sheets in PDB entry 4YGU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
58 62anti-parallel
Strand 3
A
99 105anti-parallel
Strand 4
A
46 53parallel
Strand 5
A
116 121parallel
Strand 6
A
137 146parallel
Strand 7
A
125 126parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 146first strand
Strand 2
A
157 172parallel
Strand 3
A
149 154parallel
Strand 4
A
129 134parallel
Strand 5
A
110 113parallel
Strand 6
A
40 43parallel
Strand 7
A
79 84parallel
Strand 8
A
71 76anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 172first strand
Strand 2
A
176 191parallel
Strand 3
B
176 191anti-parallel
Strand 4
B
157 173parallel
Strand 5
B
149 154parallel
Strand 6
B
129 134parallel
Strand 7
B
110 113parallel
Strand 8
B
40 43parallel
Strand 9
B
79 84parallel
Strand 10
B
71 76anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 205first strand
Strand 2
A
176 191parallel
Strand 3
B
176 191anti-parallel
Strand 4
B
195 205parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 126first strand
Strand 2
B
137 146parallel
Strand 3
B
157 173parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 146first strand
Strand 2
B
116 121parallel
Strand 3
B
46 53parallel
Strand 4
B
99 105parallel
Strand 5
B
58 62anti-parallel
Strand 6
B
31 33anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 33first strand
Strand 2
C
58 63anti-parallel
Strand 3
C
99 105anti-parallel
Strand 4
C
46 53parallel
Strand 5
C
116 121parallel
Strand 6
C
137 146parallel
Strand 7
C
157 173parallel
Strand 8
C
125 126first strand
Back to list of sheets
Back to top of page

There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 76first strand
Strand 2
C
79 84anti-parallel
Strand 3
C
40 43parallel
Strand 4
C
110 113parallel
Strand 5
C
129 134parallel
Strand 6
C
149 154parallel
Strand 7
C
157 173parallel
Strand 8
C
137 146parallel
Strand 9
C
176 191first strand
Strand 10
C
195 205parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
29 33first strand
Strand 2
D
58 63anti-parallel
Strand 3
D
99 105anti-parallel
Strand 4
D
40 53parallel
Strand 5
D
79 84parallel
Strand 6
D
71 76anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
125 126first strand
Strand 2
D
129 146parallel
Strand 3
D
110 121parallel
Strand 4
D
40 53parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
159 173first strand
Strand 2
D
129 146parallel
Strand 3
D
149 154parallel
Strand 4
D
159 173parallel
Strand 5
D
178 192parallel
Strand 6
D
197 205parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il