Analysis of interatomic Contacts of Structural Units in PDB entry:
4YHH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YHH entry

There are 21 chains in PDB entry 4YHH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
G 3 U 1532
B
VAL 3GLY 228
C
GLY 2VAL 207
D
GLY 2ARG 209
E
ASP 5GLN 161
F
MET 1ALA 101
G
ALA 2TRP 156
H
MET 1TRP 138
I
GLU 2ARG 128
J
LYS 3VAL 101
K
LYS 11PHE 125
L
PRO 5ALA 128
M
ALA 2LYS 120
N
ALA 2TRP 61
O
PRO 2GLY 89
P
MET 1ARG 85
Q
PRO 2ALA 105
R
PRO 16LYS 88
S
PRO 2GLY 84
T
ARG 8ALA 106
V
GLY 2LYS 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 85 helices in PDB entry 4YHH. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
B
6 14Right-handed alpha
Helix 2
AA2
B
25 32Right-handed 310
Helix 3
AA3
B
43 47Right-handed 310
Helix 4
AA4
B
48 64Right-handed alpha
Helix 5
AA5
B
77 86Right-handed alpha
Helix 6
AA6
B
104 110Right-handed alpha
Helix 7
AA7
B
112 124Right-handed alpha
Helix 8
AA8
B
125 130Right-handed alpha
Helix 9
AA9
B
131 150Right-handed alpha
Helix 10
AB1
B
172 180Right-handed alpha
Helix 11
AB2
B
209 219Right-handed alpha
Helix 12
AB3
B
219 224Right-handed alpha
Helix 13
AB4
B
225 227Right-handed 310
Helix 14
AB5
C
7 11Right-handed 310
Helix 15
AB6
C
25 48Right-handed alpha
Helix 16
AB7
C
49 51Right-handed 310
Helix 17
AB8
C
72 76Right-handed 310
Helix 18
AB9
C
83 89Right-handed alpha
Helix 19
AC1
C
112 126Right-handed alpha
Helix 20
AC2
C
129 142Right-handed alpha
Helix 21
AC3
D
24 28Right-handed 310
Helix 22
AC4
D
31 35Right-handed 310
Helix 23
AC5
D
52 67Right-handed alpha
Helix 24
AC6
D
71 84Right-handed alpha
Helix 25
AC7
D
88 96Right-handed alpha
Helix 26
AC8
D
101 106Right-handed alpha
Helix 27
AC9
D
113 123Right-handed alpha
Helix 28
AD1
D
149 154Right-handed alpha
Helix 29
AD2
D
155 165Right-handed alpha
Helix 30
AD3
D
178 181Right-handed 310
Helix 31
AD4
D
200 205Right-handed alpha
Helix 32
AD5
E
50 65Right-handed alpha
Helix 33
AD6
E
103 115Right-handed alpha
Helix 34
AD7
E
127 141Right-handed alpha
Helix 35
AD8
E
153 157Right-handed 310
Helix 36
AD9
F
15 33Right-handed alpha
Helix 37
AE1
F
68 70Right-handed 310
Helix 38
AE2
F
71 80Right-handed alpha
Helix 39
AE3
G
20 31Right-handed alpha
Helix 40
AE4
G
35 54Right-handed alpha
Helix 41
AE5
G
57 68Right-handed alpha
Helix 42
AE6
G
92 111Right-handed alpha
Helix 43
AE7
G
115 126Right-handed alpha
Helix 44
AE8
G
131 139Right-handed alpha
Helix 45
AE9
G
142 147Right-handed alpha
Helix 46
AF1
G
148 152Right-handed 310
Helix 47
AF2
H
4 18Right-handed alpha
Helix 48
AF3
H
30 42Right-handed alpha
Helix 49
AF4
H
103 107Right-handed 310
Helix 50
AF5
H
121 128Right-handed alpha
Helix 51
AF6
I
42 51Right-handed 310
Helix 52
AF7
I
69 85Right-handed alpha
Helix 53
AF8
J
14 24Right-handed alpha
Helix 54
AF9
K
45 49Right-handed alpha
Helix 55
AG1
K
52 56Right-handed 310
Helix 56
AG2
K
57 74Right-handed alpha
Helix 57
AG3
K
90 100Right-handed alpha
Helix 58
AG4
L
6 13Right-handed alpha
Helix 59
AG5
M
14 21Right-handed alpha
Helix 60
AG6
M
26 32Right-handed alpha
Helix 61
AG7
M
50 63Right-handed alpha
Helix 62
AG8
M
66 84Right-handed alpha
Helix 63
AG9
M
86 95Right-handed alpha
Helix 64
AH1
M
107 112Right-handed alpha
Helix 65
AH2
N
4 12Right-handed alpha
Helix 66
AH3
N
16 20Right-handed 310
Helix 67
AH4
N
40 49Right-handed alpha
Helix 68
AH5
O
4 14Right-handed alpha
Helix 69
AH6
O
24 46Right-handed alpha
Helix 70
AH7
O
49 74Right-handed alpha
Helix 71
AH8
O
75 84Right-handed alpha
Helix 72
AH9
P
52 57Right-handed alpha
Helix 73
AI1
P
58 63Right-handed alpha
Helix 74
AI2
P
68 76Right-handed alpha
Helix 75
AI3
Q
81 94Right-handed alpha
Helix 76
AI4
Q
95 97Right-handed 310
Helix 77
AI5
R
52 57Right-handed alpha
Helix 78
AI6
R
61 70Right-handed alpha
Helix 79
AI7
R
71 76Right-handed alpha
Helix 80
AI8
S
12 18Right-handed alpha
Helix 81
AI9
S
70 75Right-handed 310
Helix 82
AJ1
T
11 46Right-handed alpha
Helix 83
AJ2
T
48 69Right-handed alpha
Helix 84
AJ3
T
73 92Right-handed alpha
Helix 85
AJ4
V
8 16Right-handed alpha
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There are 23 sheets in PDB entry 4YHH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
92 93first strand
Strand 2
B
68 71parallel
Strand 3
B
161 165parallel
Strand 4
B
184 188parallel
Strand 5
B
199 202parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
57 60first strand
Strand 2
C
63 66anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
69 70first strand
Strand 2
C
104 105parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
168 171first strand
Strand 2
C
148 153anti-parallel
Strand 3
C
198 206anti-parallel
Strand 4
C
180 184anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
190 191first strand
Strand 2
C
194 195anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
174 176first strand
Strand 2
D
183 185anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
10 17first strand
Strand 2
E
26 32anti-parallel
Strand 3
E
44 48anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
80 84first strand
Strand 2
E
87 93anti-parallel
Strand 3
E
118 119anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
40 52first strand
Strand 2
F
55 63anti-parallel
Strand 3
F
5 10anti-parallel
Strand 4
F
85 91anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
98 99first strand
Strand 2
R
29 30anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
73 75first strand
Strand 2
G
88 90anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
78 79first strand
Strand 2
G
84 85anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
23 26first strand
Strand 2
H
59 63anti-parallel
Strand 3
H
45 50anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
94 95first strand
Strand 2
H
131 137anti-parallel
Strand 3
H
109 114anti-parallel
Strand 4
H
117 120anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
4 9first strand
Strand 2
I
13 19anti-parallel
Strand 3
I
61 67anti-parallel
Strand 4
I
26 28parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
33 35first strand
Strand 2
J
60 75anti-parallel
Strand 3
J
43 50anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
33 35first strand
Strand 2
J
60 75anti-parallel
Strand 3
J
4 10anti-parallel
Strand 4
J
96 100anti-parallel
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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
41 44first strand
Strand 2
K
28 33anti-parallel
Strand 3
K
16 23anti-parallel
Strand 4
K
79 85parallel
Strand 5
K
104 110parallel
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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
36 42first strand
Strand 2
L
54 59anti-parallel
Strand 3
L
65 69anti-parallel
Strand 4
L
98 100parallel
Strand 5
L
85 86anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
3 4first strand
Strand 2
M
7 8anti-parallel
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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
49 50first strand
Strand 2
P
34 39anti-parallel
Strand 3
P
17 23anti-parallel
Strand 4
P
2 8anti-parallel
Strand 5
P
65 66parallel
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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
35 41first strand
Strand 2
Q
18 28anti-parallel
Strand 3
Q
44 45anti-parallel
Strand 4
Q
69 78parallel
Strand 5
Q
56 66anti-parallel
Strand 6
Q
5 12anti-parallel
Strand 7
Q
18 28anti-parallel
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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
30 32first strand
Strand 2
S
48 53parallel
Strand 3
S
56 61anti-parallel
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