Analysis of interatomic Contacts of Structural Units in PDB entry:
4YHJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YHJ entry

There are 2 chains in PDB entry 4YHJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 25ILE 525
B
 GLY 25LYS 527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 54 helices in PDB entry 4YHJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 34Right-handed alpha
Helix 2
AA2
A
42 49Right-handed alpha
Helix 3
AA3
A
52 58Right-handed alpha
Helix 4
AA4
A
60 72Right-handed alpha
Helix 5
AA5
A
74 92Right-handed alpha
Helix 6
AA6
A
97 110Right-handed alpha
Helix 7
AA7
A
122 133Right-handed alpha
Helix 8
AA8
A
143 155Right-handed alpha
Helix 9
AA9
A
156 163Right-handed alpha
Helix 10
AB1
A
165 179Right-handed alpha
Helix 11
AB2
A
183 185Right-handed 310
Helix 12
AB3
A
220 227Right-handed alpha
Helix 13
AB4
A
228 242Right-handed alpha
Helix 14
AB5
A
271 277Right-handed alpha
Helix 15
AB6
A
285 305Right-handed alpha
Helix 16
AB7
A
314 316Right-handed 310
Helix 17
AB8
A
354 359Right-handed alpha
Helix 18
AB9
A
365 382Right-handed alpha
Helix 19
AC1
A
394 404Right-handed alpha
Helix 20
AC2
A
414 425Right-handed alpha
Helix 21
AC3
A
428 432Right-handed 310
Helix 22
AC4
A
438 445Right-handed alpha
Helix 23
AC5
A
446 450Right-handed 310
Helix 24
AC6
A
453 459Right-handed alpha
Helix 25
AC7
A
493 501Right-handed alpha
Helix 26
AC8
A
508 519Right-handed alpha
Helix 27
AC9
B
29 34Right-handed alpha
Helix 28
AD1
B
38 41Right-handed 310
Helix 29
AD2
B
42 49Right-handed alpha
Helix 30
AD3
B
52 57Right-handed alpha
Helix 31
AD4
B
60 73Right-handed alpha
Helix 32
AD5
B
74 92Right-handed alpha
Helix 33
AD6
B
97 110Right-handed alpha
Helix 34
AD7
B
122 133Right-handed alpha
Helix 35
AD8
B
143 155Right-handed alpha
Helix 36
AD9
B
156 164Right-handed alpha
Helix 37
AE1
B
165 179Right-handed alpha
Helix 38
AE2
B
183 185Right-handed 310
Helix 39
AE3
B
220 226Right-handed alpha
Helix 40
AE4
B
228 242Right-handed alpha
Helix 41
AE5
B
271 277Right-handed alpha
Helix 42
AE6
B
285 306Right-handed alpha
Helix 43
AE7
B
314 316Right-handed 310
Helix 44
AE8
B
354 359Right-handed alpha
Helix 45
AE9
B
365 381Right-handed alpha
Helix 46
AF1
B
394 404Right-handed alpha
Helix 47
AF2
B
414 425Right-handed alpha
Helix 48
AF3
B
428 432Right-handed 310
Helix 49
AF4
B
438 445Right-handed alpha
Helix 50
AF5
B
446 450Right-handed 310
Helix 51
AF6
B
453 459Right-handed alpha
Helix 52
AF7
B
493 502Right-handed alpha
Helix 53
AF8
B
508 519Right-handed alpha
Helix 54
AF9
B
520 527Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 4YHJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 195first strand
Strand 2
A
200 206anti-parallel
Strand 3
A
212 219anti-parallel
Strand 4
A
259 264anti-parallel
Strand 5
A
250 255anti-parallel
Strand 6
A
505 507anti-parallel
Strand 7
B
341 342anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 309first strand
Strand 2
A
335 336anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 320first strand
Strand 2
A
326 328anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 342first strand
Strand 2
B
505 507anti-parallel
Strand 3
B
250 255anti-parallel
Strand 4
B
259 264anti-parallel
Strand 5
B
212 219anti-parallel
Strand 6
B
200 206anti-parallel
Strand 7
B
187 195anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 309first strand
Strand 2
B
335 336anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
318 320first strand
Strand 2
B
326 328anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il