Analysis of interatomic Contacts of Structural Units in PDB entry:
4YIG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YIG entry

There are 15 chains in PDB entry 4YIG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP -1TYR 218
B
 MET 1VAL 50
C
 C 1 T 4
C
 A 6 T 10
D
 A 22 G 31
E
 ASP -1TYR 218
F
 MET 1VAL 50
G
 C 1 T 4
G
 A 6 T 10
H
 A 22 G 31
I
 ASP -1TYR 218
J
 MET 1VAL 50
K
 C 1 T 4
K
 A 6 T 10
L
 A 22 G 31
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 4YIG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 21Right-handed 310
Helix 2
AA2
A
22 39Right-handed alpha
Helix 3
AA3
A
45 49Right-handed 310
Helix 4
AA4
A
50 55Right-handed 310
Helix 5
AA5
A
86 101Right-handed alpha
Helix 6
AA6
A
110 113Right-handed 310
Helix 7
AA7
A
133 152Right-handed alpha
Helix 8
AA8
A
159 164Right-handed alpha
Helix 9
AA9
A
193 205Right-handed alpha
Helix 10
AB1
A
211 214Right-handed 310
Helix 11
AB2
B
2 20Right-handed alpha
Helix 12
AB3
B
24 43Right-handed alpha
Helix 13
AB4
E
18 21Right-handed 310
Helix 14
AB5
E
22 39Right-handed alpha
Helix 15
AB6
E
45 49Right-handed 310
Helix 16
AB7
E
50 55Right-handed 310
Helix 17
AB8
E
86 101Right-handed alpha
Helix 18
AB9
E
133 151Right-handed alpha
Helix 19
AC1
E
159 164Right-handed alpha
Helix 20
AC2
E
165 170Right-handed alpha
Helix 21
AC3
E
188 192Right-handed 310
Helix 22
AC4
E
193 204Right-handed alpha
Helix 23
AC5
E
211 214Right-handed 310
Helix 24
AC6
F
2 20Right-handed alpha
Helix 25
AC7
F
24 43Right-handed alpha
Helix 26
AC8
I
19 39Right-handed alpha
Helix 27
AC9
I
50 55Right-handed 310
Helix 28
AD1
I
86 101Right-handed alpha
Helix 29
AD2
I
110 113Right-handed 310
Helix 30
AD3
I
133 152Right-handed alpha
Helix 31
AD4
I
159 164Right-handed alpha
Helix 32
AD5
I
188 192Right-handed 310
Helix 33
AD6
I
193 205Right-handed alpha
Helix 34
AD7
I
211 214Right-handed 310
Helix 35
AD8
J
2 20Right-handed alpha
Helix 36
AD9
J
24 43Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 4YIG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 2first strand
Strand 2
A
15 16anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 43first strand
Strand 2
A
125 126anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 120first strand
Strand 2
A
62 66parallel
Strand 3
A
154 158parallel
Strand 4
A
175 179parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
216 217anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1 5first strand
Strand 2
E
12 16anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
42 43first strand
Strand 2
E
125 126anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
116 120first strand
Strand 2
E
62 66parallel
Strand 3
E
154 158parallel
Strand 4
E
175 179parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
107 108first strand
Strand 2
E
216 217anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
1 2first strand
Strand 2
I
15 16anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
42 43first strand
Strand 2
I
125 126anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
115 120first strand
Strand 2
I
60 66parallel
Strand 3
I
154 158parallel
Strand 4
I
175 179parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
107 108first strand
Strand 2
I
216 217anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il