Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 4YJ4 entry
Note, this PDB entry contains
modified residue(s) PHOSPHOSERINE (SEP) . This residue is
treated as heterogroup (ligand) both in the
PDB entry and in LPC/CSU analysis.
There are 3 chains in PDB entry 4YJ4
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
|---|
A
|
GLY -1 | GLY 196 |
B
|
ILE 146 | ASP 157 |
B
|
PHE 159 | TYR 163 |
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There are 11
helices in PDB entry 4YJ4. Click on helix of interest for
CSU analysis.
Helix
number
| Helix
ID | Chain
ID |
Initial
residue | Terminal
residue |
Helix class |
|---|
| Helix 1 |
AA1 | A
| -1 |
20 | Right-handed alpha |
| Helix 2 |
AA2 | A
| 23 |
27 | Right-handed 310 |
| Helix 3 |
AA3 | A
| 84 |
102 | Right-handed alpha |
| Helix 4 |
AA4 | A
| 103 |
106 | Right-handed 310 |
| Helix 5 |
AA5 | A
| 107 |
112 | Right-handed alpha |
| Helix 6 |
AA6 | A
| 118 |
131 | Right-handed alpha |
| Helix 7 |
AA7 | A
| 136 |
157 | Right-handed alpha |
| Helix 8 |
AA8 | A
| 161 |
178 | Right-handed alpha |
| Helix 9 |
AA9 | A
| 178 |
185 | Right-handed alpha |
| Helix 10 |
AB1 | A
| 186 |
196 | Right-handed alpha |
| Helix 11 |
AB2 | B
| 146 |
163 | Right-handed alpha |
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There are no sheets in PDB entry
4YJ4
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il