Analysis of interatomic Contacts of Structural Units in PDB entry:
4YJ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YJ6 entry

There is 1 chain in PDB entry 4YJ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6LEU 495
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 4YJ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 22Right-handed alpha
Helix 2
AA2
A
26 46Right-handed alpha
Helix 3
AA3
A
52 70Right-handed alpha
Helix 4
AA4
A
100 104Right-handed 310
Helix 5
AA5
A
114 123Right-handed alpha
Helix 6
AA6
A
134 138Right-handed 310
Helix 7
AA7
A
164 173Right-handed alpha
Helix 8
AA8
A
189 195Right-handed alpha
Helix 9
AA9
A
230 242Right-handed alpha
Helix 10
AB1
A
257 262Right-handed 310
Helix 11
AB2
A
283 300Right-handed alpha
Helix 12
AB3
A
314 340Right-handed alpha
Helix 13
AB4
A
348 352Right-handed 310
Helix 14
AB5
A
353 364Right-handed alpha
Helix 15
AB6
A
367 390Right-handed alpha
Helix 16
AB7
A
433 440Right-handed alpha
Helix 17
AB8
A
466 481Right-handed alpha
Helix 18
AB9
A
483 486Right-handed 310
Helix 19
AC1
A
487 492Right-handed alpha
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There are 4 sheets in PDB entry 4YJ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
126 131anti-parallel
Strand 3
A
80 84parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
155 159anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 183first strand
Strand 2
A
223 228anti-parallel
Strand 3
A
198 201anti-parallel
Strand 4
A
443 451anti-parallel
Strand 5
A
454 462anti-parallel
Strand 6
A
394 398anti-parallel
Strand 7
A
270 273parallel
Strand 8
A
303 306parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 419first strand
Strand 2
A
422 423anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il