Analysis of interatomic Contacts of Structural Units in PDB entry:
4YJH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YJH entry

There are 2 chains in PDB entry 4YJH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 342
B
 MET 1LEU 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4YJH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 24Right-handed alpha
Helix 2
AA2
A
43 48Right-handed alpha
Helix 3
AA3
A
62 77Right-handed alpha
Helix 4
AA4
A
84 87Right-handed 310
Helix 5
AA5
A
118 123Right-handed alpha
Helix 6
AA6
A
140 155Right-handed alpha
Helix 7
AA7
A
166 173Right-handed alpha
Helix 8
AA8
A
182 189Right-handed 310
Helix 9
AA9
A
252 267Right-handed alpha
Helix 10
AB1
A
268 273Right-handed 310
Helix 11
AB2
A
314 337Right-handed alpha
Helix 12
AB3
B
9 24Right-handed alpha
Helix 13
AB4
B
43 48Right-handed alpha
Helix 14
AB5
B
61 79Right-handed alpha
Helix 15
AB6
B
84 87Right-handed 310
Helix 16
AB7
B
118 123Right-handed alpha
Helix 17
AB8
B
140 155Right-handed alpha
Helix 18
AB9
B
166 173Right-handed alpha
Helix 19
AC1
B
182 189Right-handed 310
Helix 20
AC2
B
252 267Right-handed alpha
Helix 21
AC3
B
268 273Right-handed 310
Helix 22
AC4
B
314 336Right-handed alpha
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There are 6 sheets in PDB entry 4YJH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 161first strand
Strand 2
A
31 36parallel
Strand 3
A
2 6parallel
Strand 4
A
177 180parallel
Strand 5
A
301 307parallel
Strand 6
A
293 298anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 116first strand
Strand 2
A
130 139anti-parallel
Strand 3
A
89 98anti-parallel
Strand 4
A
213 216parallel
Strand 5
A
228 231anti-parallel
Strand 6
A
236 239anti-parallel
Strand 7
A
196 206anti-parallel
Strand 8
A
243 244anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 116first strand
Strand 2
A
130 139anti-parallel
Strand 3
A
89 98anti-parallel
Strand 4
A
213 216parallel
Strand 5
A
228 231anti-parallel
Strand 6
A
236 239anti-parallel
Strand 7
A
196 206anti-parallel
Strand 8
A
274 285anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 161first strand
Strand 2
B
31 36parallel
Strand 3
B
2 6parallel
Strand 4
B
177 180parallel
Strand 5
B
302 307parallel
Strand 6
B
293 297anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 116first strand
Strand 2
B
130 139anti-parallel
Strand 3
B
89 98anti-parallel
Strand 4
B
213 216parallel
Strand 5
B
228 231anti-parallel
Strand 6
B
236 239anti-parallel
Strand 7
B
196 206anti-parallel
Strand 8
B
243 244anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 116first strand
Strand 2
B
130 139anti-parallel
Strand 3
B
89 98anti-parallel
Strand 4
B
213 216parallel
Strand 5
B
228 231anti-parallel
Strand 6
B
236 239anti-parallel
Strand 7
B
196 206anti-parallel
Strand 8
B
274 285anti-parallel
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