Analysis of interatomic Contacts of Structural Units in PDB entry:
4YJY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YJY entry

There are 2 chains in PDB entry 4YJY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 393
B
 VAL 5THR 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 4YJY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 15Right-handed alpha
Helix 2
AA2
A
38 47Right-handed alpha
Helix 3
AA3
A
52 66Right-handed alpha
Helix 4
AA4
A
76 83Right-handed alpha
Helix 5
AA5
A
84 87Right-handed 310
Helix 6
AA6
A
93 121Right-handed alpha
Helix 7
AA7
A
123 127Right-handed 310
Helix 8
AA8
A
142 152Right-handed alpha
Helix 9
AA9
A
168 183Right-handed alpha
Helix 10
AB1
A
196 200Right-handed 310
Helix 11
AB2
A
208 218Right-handed alpha
Helix 12
AB3
A
273 291Right-handed alpha
Helix 13
AB4
A
292 294Right-handed 310
Helix 14
AB5
A
297 301Right-handed 310
Helix 15
AB6
A
309 321Right-handed alpha
Helix 16
AB7
A
323 326Right-handed 310
Helix 17
AB8
A
327 338Right-handed alpha
Helix 18
AB9
A
340 342Right-handed 310
Helix 19
AC1
A
343 359Right-handed alpha
Helix 20
AC2
B
6 15Right-handed alpha
Helix 21
AC3
B
38 47Right-handed alpha
Helix 22
AC4
B
52 66Right-handed alpha
Helix 23
AC5
B
76 83Right-handed alpha
Helix 24
AC6
B
84 87Right-handed 310
Helix 25
AC7
B
93 121Right-handed alpha
Helix 26
AC8
B
123 127Right-handed 310
Helix 27
AC9
B
142 152Right-handed alpha
Helix 28
AD1
B
168 183Right-handed alpha
Helix 29
AD2
B
196 200Right-handed 310
Helix 30
AD3
B
209 218Right-handed alpha
Helix 31
AD4
B
273 291Right-handed alpha
Helix 32
AD5
B
292 294Right-handed 310
Helix 33
AD6
B
309 321Right-handed alpha
Helix 34
AD7
B
323 326Right-handed 310
Helix 35
AD8
B
327 338Right-handed alpha
Helix 36
AD9
B
340 342Right-handed 310
Helix 37
AE1
B
343 359Right-handed alpha
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There are 6 sheets in PDB entry 4YJY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 163first strand
Strand 2
A
129 134parallel
Strand 3
A
188 195parallel
Strand 4
A
221 228anti-parallel
Strand 5
A
21 28anti-parallel
Strand 6
A
240 249anti-parallel
Strand 7
A
381 389anti-parallel
Strand 8
A
370 377anti-parallel
Strand 9
A
302 305parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
70 72anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 262first strand
Strand 2
A
265 270anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 163first strand
Strand 2
B
129 134parallel
Strand 3
B
188 195parallel
Strand 4
B
221 228anti-parallel
Strand 5
B
21 28anti-parallel
Strand 6
B
240 249anti-parallel
Strand 7
B
381 389anti-parallel
Strand 8
B
370 377anti-parallel
Strand 9
B
302 305parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 35first strand
Strand 2
B
70 72anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 262first strand
Strand 2
B
265 270anti-parallel
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