Analysis of interatomic Contacts of Structural Units in PDB entry:
4YJZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YJZ entry

There are 2 chains in PDB entry 4YJZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 ALA 52GLY 263
L
 VAL 3VAL 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 4YJZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
60 67Right-handed alpha
Helix 2
AA2
E
68 72Right-handed 310
Helix 3
AA3
E
101 109Right-handed alpha
Helix 4
AA4
E
187 196Right-handed alpha
Helix 5
AA5
L
80 84Right-handed 310
Helix 6
AA6
L
262 265Right-handed 310
Helix 7
AA7
L
287 291Right-handed 310
Helix 8
AA8
L
307 312Right-handed 310
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There are 11 sheets in PDB entry 4YJZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
54 55first strand
Strand 2
E
83 84parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
114 119first strand
Strand 2
E
256 261anti-parallel
Strand 3
E
175 184anti-parallel
Strand 4
E
251 254anti-parallel
Strand 5
E
151 153anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
114 119first strand
Strand 2
E
256 261anti-parallel
Strand 3
E
175 184anti-parallel
Strand 4
E
229 237anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
136 141first strand
Strand 2
E
144 146anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
164 169first strand
Strand 2
E
242 247anti-parallel
Strand 3
E
202 205anti-parallel
Strand 4
E
210 213anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 11first strand
Strand 2
L
105 108parallel
Strand 3
L
85 93anti-parallel
Strand 4
L
34 39anti-parallel
Strand 5
L
46 49anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 11first strand
Strand 2
L
105 108parallel
Strand 3
L
85 93anti-parallel
Strand 4
L
98 101anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
18 23first strand
Strand 2
L
71 76anti-parallel
Strand 3
L
63 68anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
203 207first strand
Strand 2
L
218 225anti-parallel
Strand 3
L
278 283anti-parallel
Strand 4
L
268 273anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
210 211first strand
Strand 2
L
322 325parallel
Strand 3
L
292 299anti-parallel
Strand 4
L
234 239anti-parallel
Strand 5
L
245 252anti-parallel
Strand 6
L
257 260anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
210 211first strand
Strand 2
L
322 325parallel
Strand 3
L
292 299anti-parallel
Strand 4
L
315 318anti-parallel
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