Analysis of interatomic Contacts of Structural Units in PDB entry:
4YK0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YK0 entry

There are 4 chains in PDB entry 4YK0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 1084LEU 1196
B
 ILE 1084LEU 1196
C
 GLU 1089ILE 1189
D
 MET 1095GLN 1187
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 4YK0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1086 1104Right-handed alpha
Helix 2
AA2
A
1108 1112Right-handed 310
Helix 3
AA3
A
1124 1129Right-handed alpha
Helix 4
AA4
A
1134 1144Right-handed alpha
Helix 5
AA5
A
1149 1168Right-handed alpha
Helix 6
AA6
A
1172 1196Right-handed alpha
Helix 7
AA7
B
1086 1104Right-handed alpha
Helix 8
AA8
B
1108 1112Right-handed 310
Helix 9
AA9
B
1116 1121Right-handed alpha
Helix 10
AB1
B
1124 1129Right-handed alpha
Helix 11
AB2
B
1134 1144Right-handed alpha
Helix 12
AB3
B
1149 1168Right-handed alpha
Helix 13
AB4
B
1172 1196Right-handed alpha
Helix 14
AB5
C
1090 1104Right-handed alpha
Helix 15
AB6
C
1108 1112Right-handed 310
Helix 16
AB7
C
1116 1121Right-handed alpha
Helix 17
AB8
C
1124 1129Right-handed alpha
Helix 18
AB9
C
1134 1144Right-handed alpha
Helix 19
AC1
C
1151 1168Right-handed alpha
Helix 20
AC2
C
1172 1189Right-handed alpha
Helix 21
AC3
D
1096 1104Right-handed alpha
Helix 22
AC4
D
1108 1112Right-handed 310
Helix 23
AC5
D
1116 1121Right-handed alpha
Helix 24
AC6
D
1124 1129Right-handed alpha
Helix 25
AC7
D
1134 1144Right-handed alpha
Helix 26
AC8
D
1151 1168Right-handed alpha
Helix 27
AC9
D
1172 1187Right-handed alpha
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There are no sheets in PDB entry 4YK0
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il