Analysis of interatomic Contacts of Structural Units in PDB entry:
4YMI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YMI entry

There are 2 chains in PDB entry 4YMI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 6GLY 203
B
 GLU 5GLY 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 4YMI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 34Right-handed alpha
Helix 2
AA2
A
57 70Right-handed alpha
Helix 3
AA3
A
79 85Right-handed alpha
Helix 4
AA4
A
89 101Right-handed alpha
Helix 5
AA5
A
112 116Right-handed alpha
Helix 6
AA6
A
117 121Right-handed 310
Helix 7
AA7
A
123 131Right-handed alpha
Helix 8
AA8
A
164 168Right-handed 310
Helix 9
AA9
A
169 179Right-handed alpha
Helix 10
AB1
A
190 198Right-handed alpha
Helix 11
AB2
B
20 34Right-handed alpha
Helix 12
AB3
B
57 70Right-handed alpha
Helix 13
AB4
B
79 84Right-handed alpha
Helix 14
AB5
B
89 101Right-handed alpha
Helix 15
AB6
B
112 122Right-handed alpha
Helix 16
AB7
B
123 131Right-handed alpha
Helix 17
AB8
B
164 168Right-handed 310
Helix 18
AB9
B
169 179Right-handed alpha
Helix 19
AC1
B
190 198Right-handed alpha
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There are 2 sheets in PDB entry 4YMI. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
38 43parallel
Strand 3
A
7 14parallel
Strand 4
A
104 111parallel
Strand 5
A
132 137parallel
Strand 6
A
158 162parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 77first strand
Strand 2
B
38 43parallel
Strand 3
B
7 14parallel
Strand 4
B
104 111parallel
Strand 5
B
132 137parallel
Strand 6
B
158 162parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il