Analysis of interatomic Contacts of Structural Units in PDB entry:
4YMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YMV entry

There are 4 chains in PDB entry 4YMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
J
 MET 1LEU 240
A
 MET 1LEU 240
D
 MET 1ARG 215
C
 MET 1LEU 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 4YMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
J
39 47Right-handed alpha
Helix 2
AA2
J
71 76Right-handed alpha
Helix 3
AA3
J
93 106Right-handed alpha
Helix 4
AA4
J
109 124Right-handed alpha
Helix 5
AA5
J
126 130Right-handed 310
Helix 6
AA6
J
138 152Right-handed alpha
Helix 7
AA7
J
168 170Right-handed 310
Helix 8
AA8
J
171 185Right-handed alpha
Helix 9
AA9
J
195 203Right-handed alpha
Helix 10
AB1
J
219 226Right-handed alpha
Helix 11
AB2
J
229 240Right-handed alpha
Helix 12
AB3
A
39 47Right-handed alpha
Helix 13
AB4
A
93 106Right-handed alpha
Helix 14
AB5
A
109 124Right-handed alpha
Helix 15
AB6
A
126 130Right-handed 310
Helix 16
AB7
A
133 137Right-handed 310
Helix 17
AB8
A
138 152Right-handed alpha
Helix 18
AB9
A
168 170Right-handed 310
Helix 19
AC1
A
171 185Right-handed alpha
Helix 20
AC2
A
195 203Right-handed alpha
Helix 21
AC3
A
219 227Right-handed alpha
Helix 22
AC4
A
229 240Right-handed alpha
Helix 23
AC5
D
5 10Right-handed 310
Helix 24
AC6
D
11 45Right-handed alpha
Helix 25
AC7
D
48 64Right-handed alpha
Helix 26
AC8
D
66 79Right-handed alpha
Helix 27
AC9
D
80 82Right-handed 310
Helix 28
AD1
D
86 114Right-handed alpha
Helix 29
AD2
D
115 124Right-handed alpha
Helix 30
AD3
D
128 136Right-handed alpha
Helix 31
AD4
D
136 160Right-handed alpha
Helix 32
AD5
D
161 165Right-handed 310
Helix 33
AD6
D
172 180Right-handed alpha
Helix 34
AD7
D
185 215Right-handed alpha
Helix 35
AD8
C
5 10Right-handed 310
Helix 36
AD9
C
11 46Right-handed alpha
Helix 37
AE1
C
48 64Right-handed alpha
Helix 38
AE2
C
66 76Right-handed alpha
Helix 39
AE3
C
78 82Right-handed 310
Helix 40
AE4
C
86 114Right-handed alpha
Helix 41
AE5
C
115 124Right-handed alpha
Helix 42
AE6
C
128 136Right-handed alpha
Helix 43
AE7
C
136 161Right-handed alpha
Helix 44
AE8
C
162 167Right-handed 310
Helix 45
AE9
C
173 180Right-handed alpha
Helix 46
AF1
C
185 212Right-handed alpha
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There are 4 sheets in PDB entry 4YMV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
14 24first strand
Strand 2
J
2 11anti-parallel
Strand 3
J
55 60anti-parallel
Strand 4
J
63 64anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
79 83first strand
Strand 2
J
157 161parallel
Strand 3
J
188 192parallel
Strand 4
J
29 33parallel
Strand 5
J
205 209parallel
Strand 6
J
214 218anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 24first strand
Strand 2
A
2 11anti-parallel
Strand 3
A
55 60anti-parallel
Strand 4
A
63 64anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 82first strand
Strand 2
A
157 161parallel
Strand 3
A
188 192parallel
Strand 4
A
29 33parallel
Strand 5
A
205 210parallel
Strand 6
A
213 218anti-parallel
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