Analysis of interatomic Contacts of Structural Units in PDB entry:
4YMZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YMZ entry

There are 2 chains in PDB entry 4YMZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2PHE 251
B
 ALA 2PHE 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 4YMZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 35Right-handed alpha
Helix 2
AA2
A
45 47Right-handed 310
Helix 3
AA3
A
48 57Right-handed alpha
Helix 4
AA4
A
81 88Right-handed alpha
Helix 5
AA5
A
97 104Right-handed alpha
Helix 6
AA6
A
107 121Right-handed alpha
Helix 7
AA7
A
132 138Right-handed alpha
Helix 8
AA8
A
140 153Right-handed alpha
Helix 9
AA9
A
157 162Right-handed 310
Helix 10
AB1
A
170 174Right-handed 310
Helix 11
AB2
A
181 198Right-handed alpha
Helix 12
AB3
A
203 208Right-handed alpha
Helix 13
AB4
A
219 228Right-handed alpha
Helix 14
AB5
A
238 242Right-handed 310
Helix 15
AB6
A
243 249Right-handed alpha
Helix 16
AB7
B
16 35Right-handed alpha
Helix 17
AB8
B
45 47Right-handed 310
Helix 18
AB9
B
48 57Right-handed alpha
Helix 19
AC1
B
81 88Right-handed alpha
Helix 20
AC2
B
97 104Right-handed alpha
Helix 21
AC3
B
107 121Right-handed alpha
Helix 22
AC4
B
132 138Right-handed alpha
Helix 23
AC5
B
140 153Right-handed alpha
Helix 24
AC6
B
157 162Right-handed 310
Helix 25
AC7
B
170 174Right-handed 310
Helix 26
AC8
B
181 200Right-handed alpha
Helix 27
AC9
B
203 210Right-handed alpha
Helix 28
AD1
B
222 228Right-handed alpha
Helix 29
AD2
B
238 242Right-handed 310
Helix 30
AD3
B
243 249Right-handed alpha
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There are 2 sheets in PDB entry 4YMZ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
39 43parallel
Strand 3
A
61 65parallel
Strand 4
A
92 95parallel
Strand 5
A
124 129parallel
Strand 6
A
164 168parallel
Strand 7
A
212 215parallel
Strand 8
A
234 237parallel
Strand 9
A
6 10parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 10first strand
Strand 2
B
39 43parallel
Strand 3
B
62 65parallel
Strand 4
B
92 95parallel
Strand 5
B
124 129parallel
Strand 6
B
164 168parallel
Strand 7
B
212 215parallel
Strand 8
B
234 237parallel
Strand 9
B
6 10parallel
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