Analysis of interatomic Contacts of Structural Units in PDB entry:
4YNB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YNB entry

There is 1 chain in PDB entry 4YNB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2LEU 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 4YNB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 23Right-handed alpha
Helix 2
AA2
A
54 68Right-handed alpha
Helix 3
AA3
A
105 109Right-handed 310
Helix 4
AA4
A
125 139Right-handed alpha
Helix 5
AA5
A
157 169Right-handed alpha
Helix 6
AA6
A
176 187Right-handed alpha
Helix 7
AA7
A
204 229Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 4YNB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
34 41anti-parallel
Strand 3
A
44 50anti-parallel
Strand 4
A
4 9parallel
Strand 5
A
73 82parallel
Strand 6
A
170 174anti-parallel
Strand 7
A
144 150parallel
Strand 8
A
92 100parallel
Strand 9
A
121 123anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
34 41anti-parallel
Strand 3
A
44 50anti-parallel
Strand 4
A
4 9parallel
Strand 5
A
73 82parallel
Strand 6
A
191 199parallel
Strand 7
A
92 100anti-parallel
Strand 8
A
121 123anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il