Analysis of interatomic Contacts of Structural Units in PDB entry:
4YNC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YNC entry

There is 1 chain in PDB entry 4YNC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ASP 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 4YNC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 18Right-handed 310
Helix 2
AA2
A
52 61Right-handed alpha
Helix 3
AA3
A
76 80Right-handed 310
Helix 4
AA4
A
90 107Right-handed alpha
Helix 5
AA5
A
118 122Right-handed 310
Helix 6
AA6
A
123 130Right-handed alpha
Helix 7
AA7
A
144 154Right-handed alpha
Helix 8
AA8
A
162 183Right-handed alpha
Helix 9
AA9
A
196 203Right-handed alpha
Helix 10
AB1
A
216 221Right-handed alpha
Helix 11
AB2
A
221 236Right-handed alpha
Helix 12
AB3
A
254 258Right-handed 310
Helix 13
AB4
A
260 278Right-handed alpha
Helix 14
AB5
A
310 316Right-handed alpha
Helix 15
AB6
A
329 337Right-handed alpha
Helix 16
AB7
A
347 353Right-handed alpha
Helix 17
AB8
A
355 363Right-handed alpha
Helix 18
AB9
A
370 374Right-handed 310
Helix 19
AC1
A
387 394Right-handed alpha
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There are 4 sheets in PDB entry 4YNC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
25 27anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
342 345parallel
Strand 3
A
320 323parallel
Strand 4
A
284 288parallel
Strand 5
A
240 244parallel
Strand 6
A
187 191parallel
Strand 7
A
110 116parallel
Strand 8
A
67 69parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
342 345parallel
Strand 3
A
320 323parallel
Strand 4
A
284 288parallel
Strand 5
A
240 244parallel
Strand 6
A
187 191parallel
Strand 7
A
110 116parallel
Strand 8
A
73 74parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
158 160parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il