Analysis of interatomic Contacts of Structural Units in PDB entry:
4YNG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4YNG entry

There are 8 chains in PDB entry 4YNG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 470
B	MET 1	LEU 470
C	MET 1	LEU 470
D	MET 1	LEU 470
E	MET 1	LEU 470
F	MET 1	LEU 470
G	MET 1	LEU 470
H	MET 1	LEU 470

There are148 helices in PDB entry 4YNG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	15	Right-handed 310
Helix 2	AA2	A	16	27	Right-handed alpha
Helix 3	AA3	A	39	58	Right-handed alpha
Helix 4	AA4	A	77	81	Right-handed 310
Helix 5	AA5	A	112	117	Right-handed alpha
Helix 6	AA6	A	171	185	Right-handed alpha
Helix 7	AA7	A	196	209	Right-handed alpha
Helix 8	AA8	A	223	229	Right-handed alpha
Helix 9	AA9	A	229	237	Right-handed alpha
Helix 10	AB1	A	243	251	Right-handed alpha
Helix 11	AB2	A	252	254	Right-handed 310
Helix 12	AB3	A	255	270	Right-handed alpha
Helix 13	AB4	A	281	286	Right-handed 310
Helix 14	AB5	A	291	305	Right-handed alpha
Helix 15	AB6	A	320	338	Right-handed alpha
Helix 16	AB7	A	353	369	Right-handed alpha
Helix 17	AB8	A	381	389	Right-handed alpha
Helix 18	AB9	A	402	409	Right-handed alpha
Helix 19	AC1	A	410	412	Right-handed 310
Helix 20	AC2	A	425	441	Right-handed alpha
Helix 21	AC3	B	16	27	Right-handed alpha
Helix 22	AC4	B	39	58	Right-handed alpha
Helix 23	AC5	B	77	81	Right-handed 310
Helix 24	AC6	B	112	117	Right-handed alpha
Helix 25	AC7	B	171	185	Right-handed alpha
Helix 26	AC8	B	196	209	Right-handed alpha
Helix 27	AC9	B	223	229	Right-handed alpha
Helix 28	AD1	B	229	237	Right-handed alpha
Helix 29	AD2	B	243	248	Right-handed alpha
Helix 30	AD3	B	252	270	Right-handed alpha
Helix 31	AD4	B	281	286	Right-handed 310
Helix 32	AD5	B	291	305	Right-handed alpha
Helix 33	AD6	B	320	337	Right-handed alpha
Helix 34	AD7	B	353	369	Right-handed alpha
Helix 35	AD8	B	381	389	Right-handed alpha
Helix 36	AD9	B	402	409	Right-handed alpha
Helix 37	AE1	B	425	441	Right-handed alpha
Helix 38	AE2	C	16	27	Right-handed alpha
Helix 39	AE3	C	39	58	Right-handed alpha
Helix 40	AE4	C	77	81	Right-handed 310
Helix 41	AE5	C	112	117	Right-handed alpha
Helix 42	AE6	C	171	185	Right-handed alpha
Helix 43	AE7	C	196	209	Right-handed alpha
Helix 44	AE8	C	223	229	Right-handed alpha
Helix 45	AE9	C	229	237	Right-handed alpha
Helix 46	AF1	C	244	251	Right-handed alpha
Helix 47	AF2	C	252	270	Right-handed alpha
Helix 48	AF3	C	281	286	Right-handed 310
Helix 49	AF4	C	291	305	Right-handed alpha
Helix 50	AF5	C	320	338	Right-handed alpha
Helix 51	AF6	C	353	369	Right-handed alpha
Helix 52	AF7	C	381	389	Right-handed alpha
Helix 53	AF8	C	402	409	Right-handed alpha
Helix 54	AF9	C	410	412	Right-handed 310
Helix 55	AG1	C	425	441	Right-handed alpha
Helix 56	AG2	D	16	27	Right-handed alpha
Helix 57	AG3	D	39	58	Right-handed alpha
Helix 58	AG4	D	77	81	Right-handed 310
Helix 59	AG5	D	112	117	Right-handed alpha
Helix 60	AG6	D	171	185	Right-handed alpha
Helix 61	AG7	D	196	209	Right-handed alpha
Helix 62	AG8	D	223	229	Right-handed alpha
Helix 63	AG9	D	229	237	Right-handed alpha
Helix 64	AH1	D	244	251	Right-handed alpha
Helix 65	AH2	D	252	254	Right-handed 310
Helix 66	AH3	D	255	270	Right-handed alpha
Helix 67	AH4	D	281	286	Right-handed 310
Helix 68	AH5	D	291	305	Right-handed alpha
Helix 69	AH6	D	320	337	Right-handed alpha
Helix 70	AH7	D	353	369	Right-handed alpha
Helix 71	AH8	D	381	389	Right-handed alpha
Helix 72	AH9	D	402	409	Right-handed alpha
Helix 73	AI1	D	425	441	Right-handed alpha
Helix 74	AI2	E	16	27	Right-handed alpha
Helix 75	AI3	E	39	58	Right-handed alpha
Helix 76	AI4	E	77	81	Right-handed 310
Helix 77	AI5	E	112	117	Right-handed alpha
Helix 78	AI6	E	171	185	Right-handed alpha
Helix 79	AI7	E	196	207	Right-handed alpha
Helix 80	AI8	E	223	229	Right-handed alpha
Helix 81	AI9	E	229	237	Right-handed alpha
Helix 82	AJ1	E	244	248	Right-handed alpha
Helix 83	AJ2	E	252	254	Right-handed 310
Helix 84	AJ3	E	255	270	Right-handed alpha
Helix 85	AJ4	E	281	286	Right-handed 310
Helix 86	AJ5	E	291	305	Right-handed alpha
Helix 87	AJ6	E	312	317	Right-handed alpha
Helix 88	AJ7	E	320	337	Right-handed alpha
Helix 89	AJ8	E	353	369	Right-handed alpha
Helix 90	AJ9	E	381	389	Right-handed alpha
Helix 91	AK1	E	402	409	Right-handed alpha
Helix 92	AK2	E	410	412	Right-handed 310
Helix 93	AK3	E	425	441	Right-handed alpha
Helix 94	AK4	F	16	27	Right-handed alpha
Helix 95	AK5	F	39	58	Right-handed alpha
Helix 96	AK6	F	77	81	Right-handed 310
Helix 97	AK7	F	112	117	Right-handed alpha
Helix 98	AK8	F	171	185	Right-handed alpha
Helix 99	AK9	F	196	209	Right-handed alpha
Helix 100	AL1	F	223	229	Right-handed alpha
Helix 101	AL2	F	229	237	Right-handed alpha
Helix 102	AL3	F	244	251	Right-handed alpha
Helix 103	AL4	F	252	270	Right-handed alpha
Helix 104	AL5	F	281	286	Right-handed 310
Helix 105	AL6	F	291	305	Right-handed alpha
Helix 106	AL7	F	312	317	Right-handed alpha
Helix 107	AL8	F	320	337	Right-handed alpha
Helix 108	AL9	F	353	369	Right-handed alpha
Helix 109	AM1	F	381	389	Right-handed alpha
Helix 110	AM2	F	402	409	Right-handed alpha
Helix 111	AM3	F	425	441	Right-handed alpha
Helix 112	AM4	G	16	27	Right-handed alpha
Helix 113	AM5	G	39	58	Right-handed alpha
Helix 114	AM6	G	77	81	Right-handed 310
Helix 115	AM7	G	112	117	Right-handed alpha
Helix 116	AM8	G	171	185	Right-handed alpha
Helix 117	AM9	G	196	209	Right-handed alpha
Helix 118	AN1	G	223	229	Right-handed alpha
Helix 119	AN2	G	229	237	Right-handed alpha
Helix 120	AN3	G	244	251	Right-handed alpha
Helix 121	AN4	G	252	254	Right-handed 310
Helix 122	AN5	G	255	270	Right-handed alpha
Helix 123	AN6	G	281	286	Right-handed 310
Helix 124	AN7	G	291	305	Right-handed alpha
Helix 125	AN8	G	320	337	Right-handed alpha
Helix 126	AN9	G	354	369	Right-handed alpha
Helix 127	AO1	G	381	389	Right-handed alpha
Helix 128	AO2	G	402	409	Right-handed alpha
Helix 129	AO3	G	410	412	Right-handed 310
Helix 130	AO4	G	425	441	Right-handed alpha
Helix 131	AO5	H	16	27	Right-handed alpha
Helix 132	AO6	H	39	58	Right-handed alpha
Helix 133	AO7	H	77	81	Right-handed 310
Helix 134	AO8	H	112	117	Right-handed alpha
Helix 135	AO9	H	171	185	Right-handed alpha
Helix 136	AP1	H	196	209	Right-handed alpha
Helix 137	AP2	H	223	229	Right-handed alpha
Helix 138	AP3	H	229	237	Right-handed alpha
Helix 139	AP4	H	243	251	Right-handed alpha
Helix 140	AP5	H	252	254	Right-handed 310
Helix 141	AP6	H	255	270	Right-handed alpha
Helix 142	AP7	H	281	286	Right-handed 310
Helix 143	AP8	H	291	305	Right-handed alpha
Helix 144	AP9	H	320	337	Right-handed alpha
Helix 145	AQ1	H	355	369	Right-handed alpha
Helix 146	AQ2	H	381	389	Right-handed alpha
Helix 147	AQ3	H	402	409	Right-handed alpha
Helix 148	AQ4	H	425	440	Right-handed alpha

There are 27 sheets in PDB entry 4YNG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	9	first strand
Strand 2	A	28	34	parallel
Strand 3	A	62	66	parallel
Strand 4	A	188	191	parallel
Strand 5	A	216	221	parallel
Strand 6	A	239	242	parallel
Strand 7	A	273	276	parallel
Strand 8	A	308	311	parallel
Strand 9	A	5	9	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	85	first strand
Strand 2	A	150	152	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	107	first strand
Strand 2	A	90	94	parallel
Strand 3	A	141	146	anti-parallel
Strand 4	A	130	138	anti-parallel
Strand 5	A	122	125	anti-parallel
Strand 6	A	158	159	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	419	first strand
Strand 2	A	395	400	parallel
Strand 3	A	373	377	parallel
Strand 4	A	448	453	parallel
Strand 5	A	464	469	anti-parallel
Strand 6	C	464	469	anti-parallel
Strand 7	C	448	453	anti-parallel
Strand 8	C	373	377	parallel
Strand 9	C	395	400	parallel
Strand 10	C	415	419	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	9	first strand
Strand 2	B	28	34	parallel
Strand 3	B	62	66	parallel
Strand 4	B	188	191	parallel
Strand 5	B	216	221	parallel
Strand 6	B	239	242	parallel
Strand 7	B	273	276	parallel
Strand 8	B	308	311	parallel
Strand 9	B	5	9	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	73	first strand
Strand 2	B	157	159	anti-parallel
Strand 3	B	122	125	anti-parallel
Strand 4	B	130	138	anti-parallel
Strand 5	B	141	146	anti-parallel
Strand 6	B	90	94	anti-parallel
Strand 7	B	105	107	parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	415	419	first strand
Strand 2	B	395	400	parallel
Strand 3	B	373	378	parallel
Strand 4	B	448	453	parallel
Strand 5	B	464	469	anti-parallel
Strand 6	D	464	469	anti-parallel
Strand 7	D	448	453	anti-parallel
Strand 8	D	373	377	parallel
Strand 9	D	395	400	parallel
Strand 10	D	415	419	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	9	first strand
Strand 2	C	30	34	parallel
Strand 3	C	62	66	parallel
Strand 4	C	188	191	parallel
Strand 5	C	216	221	parallel
Strand 6	C	239	243	parallel
Strand 7	C	273	277	parallel
Strand 8	C	308	311	parallel
Strand 9	C	5	9	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	73	first strand
Strand 2	C	157	159	anti-parallel
Strand 3	C	122	125	anti-parallel
Strand 4	C	130	138	anti-parallel
Strand 5	C	141	146	anti-parallel
Strand 6	C	90	94	anti-parallel
Strand 7	C	105	107	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	85	first strand
Strand 2	C	150	152	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	9	first strand
Strand 2	D	30	34	parallel
Strand 3	D	62	66	parallel
Strand 4	D	188	191	parallel
Strand 5	D	216	221	parallel
Strand 6	D	239	243	parallel
Strand 7	D	273	277	parallel
Strand 8	D	308	311	parallel
Strand 9	D	5	9	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	73	first strand
Strand 2	D	157	159	anti-parallel
Strand 3	D	122	125	anti-parallel
Strand 4	D	130	138	anti-parallel
Strand 5	D	141	146	anti-parallel
Strand 6	D	90	94	anti-parallel
Strand 7	D	105	107	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	85	first strand
Strand 2	D	150	152	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	9	first strand
Strand 2	E	30	34	parallel
Strand 3	E	62	66	parallel
Strand 4	E	188	191	parallel
Strand 5	E	216	221	parallel
Strand 6	E	239	243	parallel
Strand 7	E	273	277	parallel
Strand 8	E	308	311	parallel
Strand 9	E	5	9	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	85	first strand
Strand 2	E	150	152	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	93	first strand
Strand 2	E	142	146	anti-parallel
Strand 3	E	130	136	anti-parallel
Strand 4	E	122	125	anti-parallel
Strand 5	E	158	159	anti-parallel

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There are 10 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	415	419	first strand
Strand 2	E	395	400	parallel
Strand 3	E	373	377	parallel
Strand 4	E	448	453	parallel
Strand 5	E	464	469	anti-parallel
Strand 6	G	464	469	anti-parallel
Strand 7	G	448	453	anti-parallel
Strand 8	G	373	377	parallel
Strand 9	G	395	400	parallel
Strand 10	G	415	419	parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	9	first strand
Strand 2	F	30	34	parallel
Strand 3	F	62	66	parallel
Strand 4	F	188	191	parallel
Strand 5	F	216	221	parallel
Strand 6	F	239	243	parallel
Strand 7	F	273	277	parallel
Strand 8	F	308	311	parallel
Strand 9	F	5	9	parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	72	73	first strand
Strand 2	F	157	159	anti-parallel
Strand 3	F	122	125	anti-parallel
Strand 4	F	130	138	anti-parallel
Strand 5	F	141	146	anti-parallel
Strand 6	F	92	94	anti-parallel
Strand 7	F	105	107	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	85	first strand
Strand 2	F	150	152	anti-parallel

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There are 10 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	415	419	first strand
Strand 2	F	395	400	parallel
Strand 3	F	373	377	parallel
Strand 4	F	448	453	parallel
Strand 5	F	464	469	anti-parallel
Strand 6	H	464	469	anti-parallel
Strand 7	H	448	453	anti-parallel
Strand 8	H	373	377	parallel
Strand 9	H	395	400	parallel
Strand 10	H	415	419	parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	9	first strand
Strand 2	G	30	34	parallel
Strand 3	G	62	66	parallel
Strand 4	G	188	191	parallel
Strand 5	G	216	221	parallel
Strand 6	G	239	243	parallel
Strand 7	G	273	277	parallel
Strand 8	G	308	311	parallel
Strand 9	G	5	9	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	83	85	first strand
Strand 2	G	150	152	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	105	107	first strand
Strand 2	G	90	94	parallel
Strand 3	G	141	146	anti-parallel
Strand 4	G	130	138	anti-parallel
Strand 5	G	122	125	anti-parallel
Strand 6	G	158	159	anti-parallel

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There are 9 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	9	first strand
Strand 2	H	30	34	parallel
Strand 3	H	62	66	parallel
Strand 4	H	188	191	parallel
Strand 5	H	216	221	parallel
Strand 6	H	239	242	parallel
Strand 7	H	273	276	parallel
Strand 8	H	308	311	parallel
Strand 9	H	5	9	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	83	85	first strand
Strand 2	H	150	152	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	105	107	first strand
Strand 2	H	90	94	parallel
Strand 3	H	141	146	anti-parallel
Strand 4	H	130	138	anti-parallel
Strand 5	H	122	125	anti-parallel
Strand 6	H	158	159	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4YNG

Analysis of interatomic Contacts of Structural Units in PDB entry:
4YNG