Analysis of interatomic Contacts of Structural Units in PDB entry:
4YNW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YNW entry

There are 2 chains in PDB entry 4YNW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 28GLY 310
B
 ILE 28GLY 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 4YNW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 43Right-handed alpha
Helix 2
AA2
A
45 61Right-handed alpha
Helix 3
AA3
A
66 82Right-handed alpha
Helix 4
AA4
A
83 98Right-handed alpha
Helix 5
AA5
A
104 109Right-handed alpha
Helix 6
AA6
A
111 120Right-handed alpha
Helix 7
AA7
A
125 153Right-handed alpha
Helix 8
AA8
A
157 183Right-handed alpha
Helix 9
AA9
A
190 207Right-handed alpha
Helix 10
AB1
A
210 224Right-handed alpha
Helix 11
AB2
A
226 239Right-handed alpha
Helix 12
AB3
A
253 267Right-handed alpha
Helix 13
AB4
A
269 284Right-handed alpha
Helix 14
AB5
A
288 310Right-handed alpha
Helix 15
AB6
B
29 43Right-handed alpha
Helix 16
AB7
B
45 61Right-handed alpha
Helix 17
AB8
B
66 82Right-handed alpha
Helix 18
AB9
B
83 98Right-handed alpha
Helix 19
AC1
B
104 109Right-handed alpha
Helix 20
AC2
B
111 121Right-handed alpha
Helix 21
AC3
B
125 153Right-handed alpha
Helix 22
AC4
B
157 183Right-handed alpha
Helix 23
AC5
B
190 207Right-handed alpha
Helix 24
AC6
B
210 224Right-handed alpha
Helix 25
AC7
B
226 239Right-handed alpha
Helix 26
AC8
B
253 267Right-handed alpha
Helix 27
AC9
B
269 284Right-handed alpha
Helix 28
AD1
B
288 310Right-handed alpha
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There are no sheets in PDB entry 4YNW
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il