Analysis of interatomic Contacts of Structural Units in PDB entry:
4YNZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YNZ entry

There are 2 chains in PDB entry 4YNZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 9LEU 343
B
 GLY 9LEU 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 4YNZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 72Right-handed alpha
Helix 2
AA2
A
103 112Right-handed alpha
Helix 3
AA3
A
115 136Right-handed alpha
Helix 4
AA4
A
144 146Right-handed 310
Helix 5
AA5
A
163 167Right-handed 310
Helix 6
AA6
A
179 183Right-handed 310
Helix 7
AA7
A
184 189Right-handed alpha
Helix 8
AA8
A
194 213Right-handed alpha
Helix 9
AA9
A
221 232Right-handed alpha
Helix 10
AB1
A
241 252Right-handed alpha
Helix 11
AB2
A
261 267Right-handed alpha
Helix 12
AB3
A
268 273Right-handed alpha
Helix 13
AB4
A
295 299Right-handed 310
Helix 14
AB5
A
300 309Right-handed alpha
Helix 15
AB6
A
315 325Right-handed alpha
Helix 16
AB7
A
329 343Right-handed alpha
Helix 17
AB8
B
57 74Right-handed alpha
Helix 18
AB9
B
103 112Right-handed alpha
Helix 19
AC1
B
115 136Right-handed alpha
Helix 20
AC2
B
144 146Right-handed 310
Helix 21
AC3
B
179 183Right-handed 310
Helix 22
AC4
B
184 189Right-handed alpha
Helix 23
AC5
B
194 213Right-handed alpha
Helix 24
AC6
B
221 232Right-handed alpha
Helix 25
AC7
B
241 252Right-handed alpha
Helix 26
AC8
B
261 268Right-handed alpha
Helix 27
AC9
B
268 273Right-handed alpha
Helix 28
AD1
B
295 299Right-handed 310
Helix 29
AD2
B
300 309Right-handed alpha
Helix 30
AD3
B
315 325Right-handed alpha
Helix 31
AD4
B
329 343Right-handed alpha
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There are 4 sheets in PDB entry 4YNZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
20 29anti-parallel
Strand 3
A
32 39anti-parallel
Strand 4
A
45 52anti-parallel
Strand 5
A
91 96anti-parallel
Strand 6
A
82 87anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 150first strand
Strand 2
A
156 158anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 17first strand
Strand 2
B
20 29anti-parallel
Strand 3
B
32 39anti-parallel
Strand 4
B
45 52anti-parallel
Strand 5
B
91 96anti-parallel
Strand 6
B
82 87anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 150first strand
Strand 2
B
156 158anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il