Analysis of interatomic Contacts of Structural Units in PDB entry:
4YOM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YOM entry

There are 2 chains in PDB entry 4YOM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 HIS 13GLU 344
A
 LYS 519SER 636
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 4YOM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
57 72Right-handed alpha
Helix 2
AA2
B
103 112Right-handed alpha
Helix 3
AA3
B
115 136Right-handed alpha
Helix 4
AA4
B
144 146Right-handed 310
Helix 5
AA5
B
163 167Right-handed 310
Helix 6
AA6
B
179 183Right-handed 310
Helix 7
AA7
B
184 189Right-handed alpha
Helix 8
AA8
B
194 213Right-handed alpha
Helix 9
AA9
B
221 232Right-handed alpha
Helix 10
AB1
B
241 252Right-handed alpha
Helix 11
AB2
B
261 267Right-handed alpha
Helix 12
AB3
B
268 273Right-handed alpha
Helix 13
AB4
B
300 309Right-handed alpha
Helix 14
AB5
B
310 314Right-handed 310
Helix 15
AB6
B
315 325Right-handed alpha
Helix 16
AB7
B
329 344Right-handed alpha
Helix 17
AB8
A
543 557Right-handed alpha
Helix 18
AB9
A
619 636Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 4YOM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 17first strand
Strand 2
B
20 27anti-parallel
Strand 3
B
33 39anti-parallel
Strand 4
B
45 52anti-parallel
Strand 5
B
91 97anti-parallel
Strand 6
B
82 87anti-parallel
Strand 7
A
520 521anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 150first strand
Strand 2
B
156 158anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 539first strand
Strand 2
A
609 617anti-parallel
Strand 3
A
588 596anti-parallel
Strand 4
A
570 575anti-parallel
Strand 5
A
561 567anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il