Analysis of interatomic Contacts of Structural Units in PDB entry:
4YOO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YOO entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 4YOO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 389HIS 965
X
 ALA 1ALA 12
X
 ALA 14PRO 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 4YOO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
391 402Right-handed alpha
Helix 2
AA2
A
409 418Right-handed alpha
Helix 3
AA3
A
423 444Right-handed alpha
Helix 4
AA4
A
453 479Right-handed alpha
Helix 5
AA5
A
479 484Right-handed alpha
Helix 6
AA6
A
488 493Right-handed alpha
Helix 7
AA7
A
494 513Right-handed alpha
Helix 8
AA8
A
520 526Right-handed alpha
Helix 9
AA9
A
529 534Right-handed alpha
Helix 10
AB1
A
534 544Right-handed alpha
Helix 11
AB2
A
548 565Right-handed alpha
Helix 12
AB3
A
566 569Right-handed 310
Helix 13
AB4
A
572 581Right-handed alpha
Helix 14
AB5
A
588 592Right-handed 310
Helix 15
AB6
A
786 807Right-handed alpha
Helix 16
AB7
A
818 831Right-handed alpha
Helix 17
AB8
A
832 836Right-handed 310
Helix 18
AB9
A
839 855Right-handed alpha
Helix 19
AC1
A
861 863Right-handed 310
Helix 20
AC2
A
864 869Right-handed alpha
Helix 21
AC3
A
875 881Right-handed alpha
Helix 22
AC4
A
929 937Right-handed alpha
Helix 23
AC5
A
937 947Right-handed alpha
Helix 24
AC6
X
12 17Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 4YOO.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
882 883first strand
Strand 2
A
927 928anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il