Analysis of interatomic Contacts of Structural Units in PDB entry:
4YOT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YOT entry

There are 3 chains in PDB entry 4YOT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 229
B
 MET 1SER 229
C
 MET 1SER 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 4YOT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 50Right-handed 310
Helix 2
AA2
A
56 73Right-handed alpha
Helix 3
AA3
A
87 91Right-handed 310
Helix 4
AA4
A
92 98Right-handed alpha
Helix 5
AA5
A
102 128Right-handed alpha
Helix 6
AA6
A
134 137Right-handed 310
Helix 7
AA7
A
138 160Right-handed alpha
Helix 8
AA8
A
189 193Right-handed 310
Helix 9
AA9
B
54 73Right-handed alpha
Helix 10
AB1
B
87 91Right-handed 310
Helix 11
AB2
B
92 98Right-handed alpha
Helix 12
AB3
B
108 128Right-handed alpha
Helix 13
AB4
B
134 137Right-handed 310
Helix 14
AB5
B
138 160Right-handed alpha
Helix 15
AB6
B
189 193Right-handed 310
Helix 16
AB7
C
46 50Right-handed 310
Helix 17
AB8
C
57 73Right-handed alpha
Helix 18
AB9
C
87 91Right-handed 310
Helix 19
AC1
C
92 98Right-handed alpha
Helix 20
AC2
C
104 128Right-handed alpha
Helix 21
AC3
C
134 137Right-handed 310
Helix 22
AC4
C
138 164Right-handed alpha
Helix 23
AC5
C
189 193Right-handed 310
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There are 9 sheets in PDB entry 4YOT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 44first strand
Strand 2
A
19 30anti-parallel
Strand 3
A
3 13anti-parallel
Strand 4
A
76 79parallel
Strand 5
A
131 132parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 44first strand
Strand 2
A
19 30anti-parallel
Strand 3
A
3 13anti-parallel
Strand 4
A
166 169anti-parallel
Strand 5
A
221 227anti-parallel
Strand 6
A
207 213anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 178first strand
Strand 2
A
182 187anti-parallel
Strand 3
A
196 200anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 44first strand
Strand 2
B
19 30anti-parallel
Strand 3
B
3 13anti-parallel
Strand 4
B
76 79parallel
Strand 5
B
131 132parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 44first strand
Strand 2
B
19 30anti-parallel
Strand 3
B
3 13anti-parallel
Strand 4
B
165 172anti-parallel
Strand 5
B
220 227anti-parallel
Strand 6
B
207 213anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 179first strand
Strand 2
B
182 187anti-parallel
Strand 3
B
196 200anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 44first strand
Strand 2
C
19 30anti-parallel
Strand 3
C
3 13anti-parallel
Strand 4
C
76 78parallel
Strand 5
C
130 132parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 44first strand
Strand 2
C
19 30anti-parallel
Strand 3
C
3 13anti-parallel
Strand 4
C
165 169anti-parallel
Strand 5
C
221 226anti-parallel
Strand 6
C
208 213anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
174 179first strand
Strand 2
C
182 187anti-parallel
Strand 3
C
196 200anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il