Analysis of interatomic Contacts of Structural Units in PDB entry:
4YPR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YPR entry

There are 8 chains in PDB entry 4YPR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6SER 360
B
 GLU 6SER 360
C
 G 13 T 22
D
 A 1 C 5
D
 T 7 C 11
E
 G 13 T 22
F
 A 1 C 5
F
 T 7 C 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 4YPR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 25Right-handed alpha
Helix 2
AA2
A
28 32Right-handed 310
Helix 3
AA3
A
35 46Right-handed alpha
Helix 4
AA4
A
50 65Right-handed alpha
Helix 5
AA5
A
67 74Right-handed alpha
Helix 6
AA6
A
75 83Right-handed alpha
Helix 7
AA7
A
89 106Right-handed alpha
Helix 8
AA8
A
113 119Right-handed alpha
Helix 9
AA9
A
124 137Right-handed alpha
Helix 10
AB1
A
144 156Right-handed alpha
Helix 11
AB2
A
163 178Right-handed alpha
Helix 12
AB3
A
182 197Right-handed alpha
Helix 13
AB4
A
204 208Right-handed 310
Helix 14
AB5
A
210 213Right-handed 310
Helix 15
AB6
A
214 219Right-handed alpha
Helix 16
AB7
A
221 225Right-handed 310
Helix 17
AB8
A
278 284Right-handed alpha
Helix 18
AB9
A
337 342Right-handed 310
Helix 19
AC1
A
345 359Right-handed alpha
Helix 20
AC2
B
9 25Right-handed alpha
Helix 21
AC3
B
28 32Right-handed 310
Helix 22
AC4
B
35 46Right-handed alpha
Helix 23
AC5
B
50 65Right-handed alpha
Helix 24
AC6
B
67 74Right-handed alpha
Helix 25
AC7
B
75 83Right-handed alpha
Helix 26
AC8
B
89 106Right-handed alpha
Helix 27
AC9
B
113 120Right-handed alpha
Helix 28
AD1
B
124 137Right-handed alpha
Helix 29
AD2
B
144 156Right-handed alpha
Helix 30
AD3
B
165 178Right-handed alpha
Helix 31
AD4
B
182 197Right-handed alpha
Helix 32
AD5
B
204 208Right-handed 310
Helix 33
AD6
B
210 213Right-handed 310
Helix 34
AD7
B
214 219Right-handed alpha
Helix 35
AD8
B
221 225Right-handed 310
Helix 36
AD9
B
278 285Right-handed alpha
Helix 37
AE1
B
337 342Right-handed 310
Helix 38
AE2
B
345 359Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 4YPR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
236 245anti-parallel
Strand 3
A
310 322parallel
Strand 4
A
293 296anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
236 245anti-parallel
Strand 3
A
310 322parallel
Strand 4
A
301 307anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
250 255anti-parallel
Strand 3
A
331 335anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 272first strand
Strand 2
B
235 245anti-parallel
Strand 3
B
310 320parallel
Strand 4
B
301 306anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 267first strand
Strand 2
B
250 255anti-parallel
Strand 3
B
331 335anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il