Analysis of interatomic Contacts of Structural Units in PDB entry:
4YPV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YPV entry

There is 1 chain in PDB entry 4YPV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE -1ALA 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 4YPV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 16Right-handed alpha
Helix 2
AA2
A
21 25Right-handed 310
Helix 3
AA3
A
26 42Right-handed alpha
Helix 4
AA4
A
97 109Right-handed alpha
Helix 5
AA5
A
126 142Right-handed alpha
Helix 6
AA6
A
142 147Right-handed alpha
Helix 7
AA7
A
159 176Right-handed alpha
Helix 8
AA8
A
196 202Right-handed alpha
Helix 9
AA9
A
209 221Right-handed alpha
Helix 10
AB1
A
232 236Right-handed 310
Helix 11
AB2
A
255 269Right-handed alpha
Helix 12
AB3
A
284 288Right-handed 310
Helix 13
AB4
A
292 310Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 4YPV.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 56first strand
Strand 2
A
63 69anti-parallel
Strand 3
A
111 115anti-parallel
Strand 4
A
78 84parallel
Strand 5
A
148 158parallel
Strand 6
A
182 186parallel
Strand 7
A
245 250parallel
Strand 8
A
273 278parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il