Analysis of interatomic Contacts of Structural Units in PDB entry:
4YR7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YR7 entry

There are 2 chains in PDB entry 4YR7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 26ASP 364
B
 ASN 26ASN 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 4YR7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 38Right-handed alpha
Helix 2
AA2
A
38 54Right-handed alpha
Helix 3
AA3
A
80 96Right-handed alpha
Helix 4
AA4
A
112 126Right-handed alpha
Helix 5
AA5
A
140 149Right-handed alpha
Helix 6
AA6
A
164 170Right-handed 310
Helix 7
AA7
A
179 195Right-handed alpha
Helix 8
AA8
A
209 228Right-handed alpha
Helix 9
AA9
A
240 255Right-handed alpha
Helix 10
AB1
A
265 280Right-handed alpha
Helix 11
AB2
A
292 302Right-handed alpha
Helix 12
AB3
A
313 328Right-handed alpha
Helix 13
AB4
A
348 360Right-handed alpha
Helix 14
AB5
B
30 38Right-handed alpha
Helix 15
AB6
B
38 54Right-handed alpha
Helix 16
AB7
B
80 96Right-handed alpha
Helix 17
AB8
B
112 124Right-handed alpha
Helix 18
AB9
B
125 127Right-handed 310
Helix 19
AC1
B
140 149Right-handed alpha
Helix 20
AC2
B
164 169Right-handed 310
Helix 21
AC3
B
179 195Right-handed alpha
Helix 22
AC4
B
209 228Right-handed alpha
Helix 23
AC5
B
240 255Right-handed alpha
Helix 24
AC6
B
265 280Right-handed alpha
Helix 25
AC7
B
292 302Right-handed alpha
Helix 26
AC8
B
313 328Right-handed alpha
Helix 27
AC9
B
348 360Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 4YR7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 107first strand
Strand 2
A
67 74parallel
Strand 3
A
130 133parallel
Strand 4
A
154 158parallel
Strand 5
A
174 177parallel
Strand 6
A
335 337parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 235first strand
Strand 2
A
200 204parallel
Strand 3
A
260 263parallel
Strand 4
A
285 286parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 310first strand
Strand 2
A
340 344anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 107first strand
Strand 2
B
67 74parallel
Strand 3
B
130 133parallel
Strand 4
B
154 158parallel
Strand 5
B
174 177parallel
Strand 6
B
335 337parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 235first strand
Strand 2
B
200 204parallel
Strand 3
B
260 263parallel
Strand 4
B
285 286parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
306 310first strand
Strand 2
B
340 344anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il