Analysis of interatomic Contacts of Structural Units in PDB entry:
4YRB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YRB entry

There are 6 chains in PDB entry 4YRB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 55ALA 357
B
 PRO 55ASN 361
C
 PRO 55ASN 361
D
 PRO 55PHE 362
E
 PRO 55HIS 363
F
 PRO 55LEU 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 63 helices in PDB entry 4YRB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 80Right-handed alpha
Helix 2
AA2
A
93 100Right-handed alpha
Helix 3
AA3
A
109 120Right-handed alpha
Helix 4
AA4
A
132 138Right-handed alpha
Helix 5
AA5
A
139 161Right-handed alpha
Helix 6
AA6
A
193 213Right-handed alpha
Helix 7
AA7
A
267 281Right-handed alpha
Helix 8
AA8
A
282 286Right-handed 310
Helix 9
AA9
A
338 344Right-handed alpha
Helix 10
AB1
A
351 356Right-handed alpha
Helix 11
AB2
B
65 79Right-handed alpha
Helix 12
AB3
B
80 82Right-handed 310
Helix 13
AB4
B
93 100Right-handed alpha
Helix 14
AB5
B
109 120Right-handed alpha
Helix 15
AB6
B
132 137Right-handed alpha
Helix 16
AB7
B
139 148Right-handed alpha
Helix 17
AB8
B
148 161Right-handed alpha
Helix 18
AB9
B
193 213Right-handed alpha
Helix 19
AC1
B
268 281Right-handed alpha
Helix 20
AC2
B
282 286Right-handed 310
Helix 21
AC3
B
338 345Right-handed alpha
Helix 22
AC4
B
351 360Right-handed alpha
Helix 23
AC5
C
67 80Right-handed alpha
Helix 24
AC6
C
93 98Right-handed alpha
Helix 25
AC7
C
109 120Right-handed alpha
Helix 26
AC8
C
132 137Right-handed alpha
Helix 27
AC9
C
139 161Right-handed alpha
Helix 28
AD1
C
193 213Right-handed alpha
Helix 29
AD2
C
268 281Right-handed alpha
Helix 30
AD3
C
282 286Right-handed 310
Helix 31
AD4
C
299 309Right-handed alpha
Helix 32
AD5
C
337 343Right-handed alpha
Helix 33
AD6
C
351 360Right-handed alpha
Helix 34
AD7
D
65 80Right-handed alpha
Helix 35
AD8
D
93 98Right-handed alpha
Helix 36
AD9
D
109 120Right-handed alpha
Helix 37
AE1
D
132 137Right-handed alpha
Helix 38
AE2
D
139 161Right-handed alpha
Helix 39
AE3
D
193 213Right-handed alpha
Helix 40
AE4
D
268 281Right-handed alpha
Helix 41
AE5
D
282 286Right-handed 310
Helix 42
AE6
D
299 307Right-handed alpha
Helix 43
AE7
D
337 344Right-handed alpha
Helix 44
AE8
D
351 362Right-handed alpha
Helix 45
AE9
E
65 80Right-handed alpha
Helix 46
AF1
E
93 98Right-handed alpha
Helix 47
AF2
E
109 120Right-handed alpha
Helix 48
AF3
E
132 139Right-handed alpha
Helix 49
AF4
E
139 161Right-handed alpha
Helix 50
AF5
E
193 213Right-handed alpha
Helix 51
AF6
E
267 281Right-handed alpha
Helix 52
AF7
E
282 286Right-handed 310
Helix 53
AF8
E
351 363Right-handed alpha
Helix 54
AF9
F
65 80Right-handed alpha
Helix 55
AG1
F
93 98Right-handed alpha
Helix 56
AG2
F
109 120Right-handed alpha
Helix 57
AG3
F
132 137Right-handed alpha
Helix 58
AG4
F
139 161Right-handed alpha
Helix 59
AG5
F
193 213Right-handed alpha
Helix 60
AG6
F
267 281Right-handed alpha
Helix 61
AG7
F
282 286Right-handed 310
Helix 62
AG8
F
339 344Right-handed alpha
Helix 63
AG9
F
351 360Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 4YRB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 104first strand
Strand 2
A
84 88parallel
Strand 3
A
58 61parallel
Strand 4
A
124 127parallel
Strand 5
A
164 166parallel
Strand 6
A
217 222parallel
Strand 7
A
169 170parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 104first strand
Strand 2
A
84 88parallel
Strand 3
A
58 61parallel
Strand 4
A
124 127parallel
Strand 5
A
164 166parallel
Strand 6
A
217 222parallel
Strand 7
A
290 292parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 104first strand
Strand 2
B
84 88parallel
Strand 3
B
58 61parallel
Strand 4
B
124 127parallel
Strand 5
B
164 170parallel
Strand 6
B
217 222parallel
Strand 7
B
290 292parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 226first strand
Strand 2
B
265 267parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
102 104first strand
Strand 2
C
84 88parallel
Strand 3
C
58 61parallel
Strand 4
C
124 127parallel
Strand 5
C
164 166parallel
Strand 6
C
216 222parallel
Strand 7
C
169 170parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
102 104first strand
Strand 2
C
84 88parallel
Strand 3
C
58 61parallel
Strand 4
C
124 127parallel
Strand 5
C
164 166parallel
Strand 6
C
216 222parallel
Strand 7
C
290 292parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
224 226first strand
Strand 2
C
263 267parallel
Strand 3
C
296 298anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
102 104first strand
Strand 2
D
84 88parallel
Strand 3
D
58 61parallel
Strand 4
D
124 127parallel
Strand 5
D
164 169parallel
Strand 6
D
217 221parallel
Strand 7
D
290 292parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
224 226first strand
Strand 2
D
263 267parallel
Strand 3
D
296 298anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
102 104first strand
Strand 2
E
84 88parallel
Strand 3
E
58 61parallel
Strand 4
E
124 127parallel
Strand 5
E
164 169parallel
Strand 6
E
216 221parallel
Strand 7
E
290 291parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
264 265first strand
Strand 2
E
296 297anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
102 104first strand
Strand 2
F
84 88parallel
Strand 3
F
58 61parallel
Strand 4
F
124 127parallel
Strand 5
F
164 169parallel
Strand 6
F
217 221parallel
Strand 7
F
290 291parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il