Analysis of interatomic Contacts of Structural Units in PDB entry:
4YSV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YSV entry

There is 1 chain in PDB entry 4YSV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 29PRO 442
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 4YSV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 77Right-handed alpha
Helix 2
AA2
A
87 101Right-handed alpha
Helix 3
AA3
A
114 131Right-handed alpha
Helix 4
AA4
A
146 153Right-handed alpha
Helix 5
AA5
A
156 161Right-handed alpha
Helix 6
AA6
A
186 203Right-handed alpha
Helix 7
AA7
A
207 209Right-handed 310
Helix 8
AA8
A
229 243Right-handed alpha
Helix 9
AA9
A
263 268Right-handed 310
Helix 10
AB1
A
279 284Right-handed 310
Helix 11
AB2
A
295 300Right-handed alpha
Helix 12
AB3
A
313 330Right-handed alpha
Helix 13
AB4
A
331 354Right-handed alpha
Helix 14
AB5
A
381 395Right-handed alpha
Helix 15
AB6
A
416 436Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4YSV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 35first strand
Strand 2
A
38 41anti-parallel
Strand 3
A
46 49anti-parallel
Strand 4
A
397 398parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 112first strand
Strand 2
A
289 294anti-parallel
Strand 3
A
275 278anti-parallel
Strand 4
A
246 250parallel
Strand 5
A
211 216parallel
Strand 6
A
134 138parallel
Strand 7
A
170 173parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 220first strand
Strand 2
A
226 227anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 362first strand
Strand 2
A
367 371anti-parallel
Strand 3
A
406 409anti-parallel
Strand 4
A
400 402anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il