Analysis of interatomic Contacts of Structural Units in PDB entry:
4YTL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YTL entry

There are 2 chains in PDB entry 4YTL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 534LYS 632
B
 PHE 534LYS 632
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 4YTL

There are 4 sheets in PDB entry 4YTL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
573 576first strand
Strand 2
A
561 566anti-parallel
Strand 3
A
551 558anti-parallel
Strand 4
B
601 608anti-parallel
Strand 5
B
611 616anti-parallel
Strand 6
B
622 626anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
580 582first strand
Strand 2
A
539 542anti-parallel
Strand 3
A
551 558anti-parallel
Strand 4
B
601 608anti-parallel
Strand 5
B
589 592anti-parallel
Strand 6
B
630 631anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 626first strand
Strand 2
A
611 616anti-parallel
Strand 3
A
601 608anti-parallel
Strand 4
A
589 592anti-parallel
Strand 5
A
630 631anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
573 576first strand
Strand 2
B
561 566anti-parallel
Strand 3
B
551 557anti-parallel
Strand 4
B
539 542anti-parallel
Strand 5
B
580 582anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il