Analysis of interatomic Contacts of Structural Units in PDB entry:
4YTM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4YTM entry

There are 8 chains in PDB entry 4YTM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 30	TYR 645
B	LYS 33	PHE 282
C	GLU 34	PRO 185
D	THR 28	LEU 156
E	SER 30	TYR 645
F	THR 31	PHE 282
G	GLU 34	LEU 184
H	THR 28	LEU 156

There are 85 helices in PDB entry 4YTM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	63	Right-handed alpha
Helix 2	AA2	A	74	83	Right-handed 310
Helix 3	AA3	A	98	111	Right-handed alpha
Helix 4	AA4	A	115	125	Right-handed alpha
Helix 5	AA5	A	125	137	Right-handed alpha
Helix 6	AA6	A	175	191	Right-handed alpha
Helix 7	AA7	A	239	243	Right-handed 310
Helix 8	AA8	A	254	263	Right-handed alpha
Helix 9	AA9	A	289	294	Right-handed alpha
Helix 10	AB1	A	306	311	Right-handed alpha
Helix 11	AB2	A	314	318	Right-handed 310
Helix 12	AB3	A	319	333	Right-handed alpha
Helix 13	AB4	A	352	359	Right-handed alpha
Helix 14	AB5	A	360	371	Right-handed alpha
Helix 15	AB6	A	436	454	Right-handed alpha
Helix 16	AB7	A	470	482	Right-handed alpha
Helix 17	AB8	A	489	504	Right-handed alpha
Helix 18	AB9	A	509	527	Right-handed alpha
Helix 19	AC1	A	540	566	Right-handed alpha
Helix 20	AC2	B	62	64	Right-handed 310
Helix 21	AC3	B	67	79	Right-handed alpha
Helix 22	AC4	B	139	149	Right-handed alpha
Helix 23	AC5	B	169	175	Right-handed alpha
Helix 24	AC6	B	188	191	Right-handed 310
Helix 25	AC7	B	192	199	Right-handed alpha
Helix 26	AC8	B	204	214	Right-handed alpha
Helix 27	AC9	B	222	227	Right-handed alpha
Helix 28	AD1	B	228	230	Right-handed 310
Helix 29	AD2	B	243	249	Right-handed alpha
Helix 30	AD3	B	254	268	Right-handed alpha
Helix 31	AD4	C	36	52	Right-handed alpha
Helix 32	AD5	C	66	95	Right-handed alpha
Helix 33	AD6	C	99	109	Right-handed alpha
Helix 34	AD7	C	113	143	Right-handed alpha
Helix 35	AD8	C	148	170	Right-handed alpha
Helix 36	AD9	C	171	177	Right-handed alpha
Helix 37	AE1	C	178	184	Right-handed alpha
Helix 38	AE2	D	43	47	Right-handed 310
Helix 39	AE3	D	55	69	Right-handed alpha
Helix 40	AE4	D	71	79	Right-handed alpha
Helix 41	AE5	D	81	108	Right-handed alpha
Helix 42	AE6	D	109	114	Right-handed alpha
Helix 43	AE7	D	114	142	Right-handed alpha
Helix 44	AE8	D	145	155	Right-handed alpha
Helix 45	AE9	E	50	63	Right-handed alpha
Helix 46	AF1	E	74	83	Right-handed 310
Helix 47	AF2	E	98	111	Right-handed alpha
Helix 48	AF3	E	115	125	Right-handed alpha
Helix 49	AF4	E	125	137	Right-handed alpha
Helix 50	AF5	E	175	188	Right-handed alpha
Helix 51	AF6	E	189	191	Right-handed 310
Helix 52	AF7	E	239	243	Right-handed 310
Helix 53	AF8	E	254	263	Right-handed alpha
Helix 54	AF9	E	289	294	Right-handed alpha
Helix 55	AG1	E	306	311	Right-handed alpha
Helix 56	AG2	E	314	318	Right-handed 310
Helix 57	AG3	E	319	333	Right-handed alpha
Helix 58	AG4	E	352	359	Right-handed alpha
Helix 59	AG5	E	360	371	Right-handed alpha
Helix 60	AG6	E	436	454	Right-handed alpha
Helix 61	AG7	E	470	482	Right-handed alpha
Helix 62	AG8	E	489	504	Right-handed alpha
Helix 63	AG9	E	509	526	Right-handed alpha
Helix 64	AH1	E	540	566	Right-handed alpha
Helix 65	AH2	F	62	64	Right-handed 310
Helix 66	AH3	F	67	79	Right-handed alpha
Helix 67	AH4	F	109	111	Right-handed 310
Helix 68	AH5	F	139	149	Right-handed alpha
Helix 69	AH6	F	169	174	Right-handed alpha
Helix 70	AH7	F	192	199	Right-handed alpha
Helix 71	AH8	F	204	216	Right-handed alpha
Helix 72	AH9	F	222	229	Right-handed alpha
Helix 73	AI1	F	243	249	Right-handed alpha
Helix 74	AI2	F	254	267	Right-handed alpha
Helix 75	AI3	G	36	52	Right-handed alpha
Helix 76	AI4	G	66	96	Right-handed alpha
Helix 77	AI5	G	99	109	Right-handed alpha
Helix 78	AI6	G	113	143	Right-handed alpha
Helix 79	AI7	G	148	169	Right-handed alpha
Helix 80	AI8	G	172	182	Right-handed alpha
Helix 81	AI9	H	55	79	Right-handed alpha
Helix 82	AJ1	H	81	108	Right-handed alpha
Helix 83	AJ2	H	109	114	Right-handed alpha
Helix 84	AJ3	H	114	141	Right-handed alpha
Helix 85	AJ4	H	145	155	Right-handed alpha

There are 22 sheets in PDB entry 4YTM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	197	first strand
Strand 2	A	67	71	parallel
Strand 3	A	37	47	parallel
Strand 4	A	224	234	parallel
Strand 5	A	409	418	parallel
Strand 6	A	400	405	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	206	first strand
Strand 2	A	211	218	anti-parallel
Strand 3	A	224	234	anti-parallel
Strand 4	A	37	47	parallel
Strand 5	D	32	33	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	169	170	anti-parallel
Strand 3	A	150	151	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	268	first strand
Strand 2	A	605	611	anti-parallel
Strand 3	A	618	619	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	268	first strand
Strand 2	A	605	611	anti-parallel
Strand 3	A	622	624	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	280	first strand
Strand 2	A	380	389	anti-parallel
Strand 3	A	344	347	anti-parallel
Strand 4	A	297	299	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	394	first strand
Strand 2	A	423	424	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	487	488	first strand
Strand 2	A	530	531	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	508	first strand
Strand 2	A	574	575	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	60	first strand
Strand 2	B	35	42	anti-parallel
Strand 3	B	121	124	parallel
Strand 4	B	98	101	anti-parallel
Strand 5	B	104	107	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	133	first strand
Strand 2	B	136	137	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	193	197	first strand
Strand 2	E	67	71	parallel
Strand 3	E	37	47	parallel
Strand 4	E	224	234	parallel
Strand 5	E	409	418	parallel
Strand 6	E	400	405	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	199	207	first strand
Strand 2	E	210	218	anti-parallel
Strand 3	E	224	234	anti-parallel
Strand 4	E	37	47	parallel
Strand 5	H	32	33	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	88	first strand
Strand 2	E	169	170	anti-parallel
Strand 3	E	150	151	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	267	268	first strand
Strand 2	E	605	611	anti-parallel
Strand 3	E	618	619	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	267	268	first strand
Strand 2	E	605	611	anti-parallel
Strand 3	E	622	624	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	273	280	first strand
Strand 2	E	380	389	anti-parallel
Strand 3	E	344	347	anti-parallel
Strand 4	E	297	299	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	393	394	first strand
Strand 2	E	423	424	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	487	488	first strand
Strand 2	E	530	531	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	507	508	first strand
Strand 2	E	574	575	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	60	first strand
Strand 2	F	35	40	anti-parallel
Strand 3	F	120	124	parallel
Strand 4	F	98	101	anti-parallel
Strand 5	F	104	107	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	131	133	first strand
Strand 2	F	136	137	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4YTM

Analysis of interatomic Contacts of Structural Units in PDB entry:
4YTM