Analysis of interatomic Contacts of Structural Units in PDB entry:
4YU0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YU0 entry

There are 2 chains in PDB entry 4YU0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4GLY 262
B
 LYS 4GLY 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 4YU0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 26Right-handed 310
Helix 2
AA2
A
27 30Right-handed 310
Helix 3
AA3
A
34 48Right-handed alpha
Helix 4
AA4
A
72 80Right-handed alpha
Helix 5
AA5
A
93 98Right-handed alpha
Helix 6
AA6
A
123 129Right-handed alpha
Helix 7
AA7
A
141 150Right-handed alpha
Helix 8
AA8
A
152 165Right-handed alpha
Helix 9
AA9
A
173 184Right-handed alpha
Helix 10
AB1
A
194 201Right-handed alpha
Helix 11
AB2
A
230 244Right-handed alpha
Helix 12
AB3
A
245 255Right-handed alpha
Helix 13
AB4
A
256 259Right-handed 310
Helix 14
AB5
B
22 26Right-handed 310
Helix 15
AB6
B
27 30Right-handed 310
Helix 16
AB7
B
34 48Right-handed alpha
Helix 17
AB8
B
72 80Right-handed alpha
Helix 18
AB9
B
93 98Right-handed alpha
Helix 19
AC1
B
123 129Right-handed alpha
Helix 20
AC2
B
141 150Right-handed alpha
Helix 21
AC3
B
152 165Right-handed alpha
Helix 22
AC4
B
173 184Right-handed alpha
Helix 23
AC5
B
194 202Right-handed alpha
Helix 24
AC6
B
230 244Right-handed alpha
Helix 25
AC7
B
245 255Right-handed alpha
Helix 26
AC8
B
256 259Right-handed 310
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There are 10 sheets in PDB entry 4YU0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 55first strand
Strand 2
A
6 10parallel
Strand 3
A
85 86parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
32 33anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 102first strand
Strand 2
A
223 225anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 109first strand
Strand 2
A
218 220anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
188 193parallel
Strand 3
A
111 116anti-parallel
Strand 4
A
208 211anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 55first strand
Strand 2
B
6 10parallel
Strand 3
B
85 86parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 19first strand
Strand 2
B
32 33anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 102first strand
Strand 2
B
223 225anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 109first strand
Strand 2
B
218 220anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 136first strand
Strand 2
B
188 193parallel
Strand 3
B
111 116anti-parallel
Strand 4
B
208 211anti-parallel
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