Analysis of interatomic Contacts of Structural Units in PDB entry:
4YUF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YUF entry

There are 2 chains in PDB entry 4YUF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 6SER 120
A
 LEU 122TYR 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 4YUF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 34Right-handed alpha
Helix 2
AA2
A
39 46Right-handed alpha
Helix 3
AA3
A
57 73Right-handed alpha
Helix 4
AA4
A
76 80Right-handed 310
Helix 5
AA5
A
96 105Right-handed alpha
Helix 6
AA6
A
119 121Right-handed 310
Helix 7
AA7
A
122 137Right-handed alpha
Helix 8
AA8
A
151 155Right-handed 310
Helix 9
AA9
A
159 164Right-handed alpha
Helix 10
AB1
A
195 199Right-handed 310
Helix 11
AB2
A
227 249Right-handed alpha
Helix 12
AB3
A
254 258Right-handed 310
Helix 13
AB4
A
267 278Right-handed alpha
Helix 14
AB5
A
279 283Right-handed 310
Helix 15
AB6
A
286 291Right-handed alpha
Helix 16
AB7
A
293 295Right-handed 310
Helix 17
AB8
A
296 308Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4YUF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
185 193anti-parallel
Strand 3
A
327 334anti-parallel
Strand 4
A
316 323anti-parallel
Strand 5
A
260 263parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 19first strand
Strand 2
A
169 176anti-parallel
Strand 3
A
143 149anti-parallel
Strand 4
A
82 85parallel
Strand 5
A
114 116parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
A
49 51anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
225 226anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il