Analysis of interatomic Contacts of Structural Units in PDB entry:
4YUQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YUQ entry

There are 2 chains in PDB entry 4YUQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 8LYS 480
B
 LYS 8LEU 481
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 4YUQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 17Right-handed 310
Helix 2
AA2
A
23 27Right-handed alpha
Helix 3
AA3
A
74 82Right-handed alpha
Helix 4
AA4
A
112 121Right-handed alpha
Helix 5
AA5
A
124 145Right-handed alpha
Helix 6
AA6
A
153 155Right-handed 310
Helix 7
AA7
A
196 202Right-handed alpha
Helix 8
AA8
A
206 223Right-handed alpha
Helix 9
AA9
A
231 242Right-handed alpha
Helix 10
AB1
A
248 254Right-handed 310
Helix 11
AB2
A
255 266Right-handed alpha
Helix 12
AB3
A
269 273Right-handed 310
Helix 13
AB4
A
275 280Right-handed alpha
Helix 14
AB5
A
281 282Right-handed 310
Helix 15
AB6
A
283 287Right-handed 310
Helix 16
AB7
A
296 309Right-handed alpha
Helix 17
AB8
A
314 328Right-handed alpha
Helix 18
AB9
A
330 345Right-handed alpha
Helix 19
AC1
A
353 368Right-handed alpha
Helix 20
AC2
A
376 392Right-handed alpha
Helix 21
AC3
A
400 409Right-handed alpha
Helix 22
AC4
A
410 415Right-handed alpha
Helix 23
AC5
A
416 428Right-handed alpha
Helix 24
AC6
A
436 445Right-handed alpha
Helix 25
AC7
A
450 462Right-handed alpha
Helix 26
AC8
A
471 480Right-handed alpha
Helix 27
AC9
B
12 17Right-handed 310
Helix 28
AD1
B
23 27Right-handed alpha
Helix 29
AD2
B
74 82Right-handed alpha
Helix 30
AD3
B
112 121Right-handed alpha
Helix 31
AD4
B
124 145Right-handed alpha
Helix 32
AD5
B
153 155Right-handed 310
Helix 33
AD6
B
196 202Right-handed alpha
Helix 34
AD7
B
206 223Right-handed alpha
Helix 35
AD8
B
231 242Right-handed alpha
Helix 36
AD9
B
248 254Right-handed 310
Helix 37
AE1
B
255 266Right-handed alpha
Helix 38
AE2
B
269 273Right-handed 310
Helix 39
AE3
B
275 280Right-handed alpha
Helix 40
AE4
B
282 288Right-handed alpha
Helix 41
AE5
B
296 309Right-handed alpha
Helix 42
AE6
B
314 328Right-handed alpha
Helix 43
AE7
B
330 345Right-handed alpha
Helix 44
AE8
B
353 368Right-handed alpha
Helix 45
AE9
B
376 392Right-handed alpha
Helix 46
AF1
B
400 409Right-handed alpha
Helix 47
AF2
B
410 415Right-handed alpha
Helix 48
AF3
B
416 428Right-handed alpha
Helix 49
AF4
B
436 445Right-handed alpha
Helix 50
AF5
B
450 462Right-handed alpha
Helix 51
AF6
B
471 480Right-handed alpha
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There are 8 sheets in PDB entry 4YUQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 36first strand
Strand 2
A
41 47anti-parallel
Strand 3
A
53 60anti-parallel
Strand 4
A
100 106anti-parallel
Strand 5
A
91 96anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
177 178anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
168 170anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 435first strand
Strand 2
A
469 470anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 36first strand
Strand 2
B
41 47anti-parallel
Strand 3
B
53 60anti-parallel
Strand 4
B
100 106anti-parallel
Strand 5
B
91 96anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 148first strand
Strand 2
B
177 178anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 159first strand
Strand 2
B
168 170anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
434 435first strand
Strand 2
B
469 470anti-parallel
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