Analysis of interatomic Contacts of Structural Units in PDB entry:
4YUT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YUT entry

There are 2 chains in PDB entry 4YUT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0VAL 350
B
 HIS 0VAL 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 4YUT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 34Right-handed alpha
Helix 2
AA2
A
54 65Right-handed alpha
Helix 3
AA3
A
104 125Right-handed alpha
Helix 4
AA4
A
127 137Right-handed alpha
Helix 5
AA5
A
139 143Right-handed 310
Helix 6
AA6
A
159 167Right-handed alpha
Helix 7
AA7
A
168 190Right-handed alpha
Helix 8
AA8
A
210 232Right-handed alpha
Helix 9
AA9
A
236 241Right-handed 310
Helix 10
AB1
A
269 285Right-handed alpha
Helix 11
AB2
A
292 299Right-handed alpha
Helix 12
AB3
A
327 335Right-handed alpha
Helix 13
AB4
A
336 342Right-handed 310
Helix 14
AB5
A
343 350Right-handed alpha
Helix 15
AB6
B
15 31Right-handed alpha
Helix 16
AB7
B
54 65Right-handed alpha
Helix 17
AB8
B
104 126Right-handed alpha
Helix 18
AB9
B
127 137Right-handed alpha
Helix 19
AC1
B
160 167Right-handed alpha
Helix 20
AC2
B
168 190Right-handed alpha
Helix 21
AC3
B
210 231Right-handed alpha
Helix 22
AC4
B
236 241Right-handed 310
Helix 23
AC5
B
269 281Right-handed alpha
Helix 24
AC6
B
281 286Right-handed alpha
Helix 25
AC7
B
293 298Right-handed alpha
Helix 26
AC8
B
327 335Right-handed alpha
Helix 27
AC9
B
336 339Right-handed 310
Helix 28
AD1
B
341 350Right-handed alpha
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There are 7 sheets in PDB entry 4YUT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 79first strand
Strand 2
A
1 9anti-parallel
Strand 3
A
45 53anti-parallel
Strand 4
A
36 41anti-parallel
Strand 5
A
91 96parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 198first strand
Strand 2
A
201 207anti-parallel
Strand 3
A
146 158anti-parallel
Strand 4
A
251 258anti-parallel
Strand 5
A
263 266anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 198first strand
Strand 2
A
201 207anti-parallel
Strand 3
A
146 158anti-parallel
Strand 4
A
242 248anti-parallel
Strand 5
A
289 291parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 311first strand
Strand 2
A
320 323anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 79first strand
Strand 2
B
1 10anti-parallel
Strand 3
B
45 53anti-parallel
Strand 4
B
36 42anti-parallel
Strand 5
B
95 96parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 198first strand
Strand 2
B
201 206anti-parallel
Strand 3
B
146 157anti-parallel
Strand 4
B
243 256anti-parallel
Strand 5
B
265 268anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 198first strand
Strand 2
B
201 206anti-parallel
Strand 3
B
146 157anti-parallel
Strand 4
B
243 256anti-parallel
Strand 5
B
289 292parallel
Strand 6
B
320 325anti-parallel
Strand 7
B
305 311anti-parallel
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