Analysis of interatomic Contacts of Structural Units in PDB entry:
4YUZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4YUZ entry

There are 4 chains in PDB entry 4YUZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 10	ASN 294
B	GLU 5	ASN 294
C	ILE 7	ASN 294
D	GLU 5	ASN 294

There are 52 helices in PDB entry 4YUZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	69	83	Right-handed alpha
Helix 2	AA2	A	99	106	Right-handed alpha
Helix 3	AA3	A	120	131	Right-handed alpha
Helix 4	AA4	A	131	136	Right-handed alpha
Helix 5	AA5	A	137	140	Right-handed 310
Helix 6	AA6	A	149	156	Right-handed alpha
Helix 7	AA7	A	184	191	Right-handed alpha
Helix 8	AA8	A	208	223	Right-handed alpha
Helix 9	AA9	A	237	239	Right-handed 310
Helix 10	AB1	A	261	265	Right-handed 310
Helix 11	AB2	A	267	271	Right-handed 310
Helix 12	AB3	A	275	283	Right-handed alpha
Helix 13	AB4	A	286	293	Right-handed 310
Helix 14	AB5	B	70	83	Right-handed alpha
Helix 15	AB6	B	99	107	Right-handed alpha
Helix 16	AB7	B	120	131	Right-handed alpha
Helix 17	AB8	B	131	136	Right-handed alpha
Helix 18	AB9	B	137	140	Right-handed 310
Helix 19	AC1	B	149	157	Right-handed alpha
Helix 20	AC2	B	182	191	Right-handed alpha
Helix 21	AC3	B	208	223	Right-handed alpha
Helix 22	AC4	B	237	241	Right-handed 310
Helix 23	AC5	B	261	265	Right-handed 310
Helix 24	AC6	B	267	271	Right-handed 310
Helix 25	AC7	B	275	282	Right-handed alpha
Helix 26	AC8	B	286	293	Right-handed 310
Helix 27	AC9	C	69	83	Right-handed alpha
Helix 28	AD1	C	99	107	Right-handed alpha
Helix 29	AD2	C	120	131	Right-handed alpha
Helix 30	AD3	C	131	136	Right-handed alpha
Helix 31	AD4	C	137	140	Right-handed 310
Helix 32	AD5	C	149	156	Right-handed alpha
Helix 33	AD6	C	184	191	Right-handed alpha
Helix 34	AD7	C	208	223	Right-handed alpha
Helix 35	AD8	C	237	239	Right-handed 310
Helix 36	AD9	C	261	265	Right-handed 310
Helix 37	AE1	C	267	271	Right-handed 310
Helix 38	AE2	C	275	283	Right-handed alpha
Helix 39	AE3	C	286	293	Right-handed 310
Helix 40	AE4	D	70	83	Right-handed alpha
Helix 41	AE5	D	99	107	Right-handed alpha
Helix 42	AE6	D	120	131	Right-handed alpha
Helix 43	AE7	D	131	136	Right-handed alpha
Helix 44	AE8	D	137	140	Right-handed 310
Helix 45	AE9	D	149	156	Right-handed alpha
Helix 46	AF1	D	182	191	Right-handed alpha
Helix 47	AF2	D	208	223	Right-handed alpha
Helix 48	AF3	D	237	239	Right-handed 310
Helix 49	AF4	D	261	265	Right-handed 310
Helix 50	AF5	D	267	271	Right-handed 310
Helix 51	AF6	D	275	283	Right-handed alpha
Helix 52	AF7	D	286	293	Right-handed 310

There are 8 sheets in PDB entry 4YUZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	14	first strand
Strand 2	A	22	36	anti-parallel
Strand 3	B	22	36	anti-parallel
Strand 4	B	11	14	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	66	first strand
Strand 2	A	55	59	anti-parallel
Strand 3	A	41	47	anti-parallel
Strand 4	A	22	36	anti-parallel
Strand 5	B	22	36	anti-parallel
Strand 6	B	41	47	anti-parallel
Strand 7	B	55	59	anti-parallel
Strand 8	B	62	66	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	147	first strand
Strand 2	A	113	118	parallel
Strand 3	A	90	95	parallel
Strand 4	A	162	168	parallel
Strand 5	A	192	201	parallel
Strand 6	A	241	248	anti-parallel
Strand 7	A	226	233	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	147	first strand
Strand 2	B	113	118	parallel
Strand 3	B	90	95	parallel
Strand 4	B	162	168	parallel
Strand 5	B	192	199	parallel
Strand 6	B	242	248	anti-parallel
Strand 7	B	226	232	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	22	36	anti-parallel
Strand 3	D	22	36	anti-parallel
Strand 4	D	11	14	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	66	first strand
Strand 2	C	55	59	anti-parallel
Strand 3	C	41	47	anti-parallel
Strand 4	C	22	36	anti-parallel
Strand 5	D	22	36	anti-parallel
Strand 6	D	41	47	anti-parallel
Strand 7	D	55	59	anti-parallel
Strand 8	D	62	66	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	147	first strand
Strand 2	C	113	118	parallel
Strand 3	C	90	95	parallel
Strand 4	C	162	168	parallel
Strand 5	C	192	201	parallel
Strand 6	C	241	248	anti-parallel
Strand 7	C	226	233	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	143	147	first strand
Strand 2	D	113	118	parallel
Strand 3	D	90	95	parallel
Strand 4	D	162	168	parallel
Strand 5	D	192	202	parallel
Strand 6	D	241	248	anti-parallel
Strand 7	D	226	233	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4YUZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
4YUZ