Analysis of interatomic Contacts of Structural Units in PDB entry:
4YV9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YV9 entry

There are 12 chains in PDB entry 4YV9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 5VAL 274
B
 LEU 5VAL 274
C
 GLU 4VAL 274
D
 GLU 4GLU 273
E
 VAL 9VAL 9
E
 ALA 11ALA 11
F
 VAL 9VAL 9
F
 ALA 11ALA 11
G
 VAL 9VAL 9
G
 ALA 11ALA 11
H
 VAL 9VAL 9
H
 ALA 11ALA 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 4YV9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 15Right-handed alpha
Helix 2
AA2
A
29 38Right-handed alpha
Helix 3
AA3
A
44 55Right-handed alpha
Helix 4
AA4
A
58 65Right-handed alpha
Helix 5
AA5
A
72 86Right-handed alpha
Helix 6
AA6
A
88 99Right-handed alpha
Helix 7
AA7
A
102 115Right-handed alpha
Helix 8
AA8
A
123 137Right-handed alpha
Helix 9
AA9
A
141 152Right-handed alpha
Helix 10
AB1
A
153 155Right-handed 310
Helix 11
AB2
A
156 170Right-handed alpha
Helix 12
AB3
A
178 198Right-handed alpha
Helix 13
AB4
A
200 216Right-handed alpha
Helix 14
AB5
A
220 239Right-handed alpha
Helix 15
AB6
A
241 257Right-handed alpha
Helix 16
AB7
A
259 274Right-handed alpha
Helix 17
AB8
B
6 16Right-handed alpha
Helix 18
AB9
B
19 24Right-handed alpha
Helix 19
AC1
B
29 38Right-handed alpha
Helix 20
AC2
B
44 55Right-handed alpha
Helix 21
AC3
B
58 67Right-handed alpha
Helix 22
AC4
B
71 86Right-handed alpha
Helix 23
AC5
B
88 99Right-handed alpha
Helix 24
AC6
B
102 114Right-handed alpha
Helix 25
AC7
B
123 137Right-handed alpha
Helix 26
AC8
B
141 152Right-handed alpha
Helix 27
AC9
B
153 155Right-handed 310
Helix 28
AD1
B
156 170Right-handed alpha
Helix 29
AD2
B
178 198Right-handed alpha
Helix 30
AD3
B
200 216Right-handed alpha
Helix 31
AD4
B
220 237Right-handed alpha
Helix 32
AD5
B
238 240Right-handed 310
Helix 33
AD6
B
241 257Right-handed alpha
Helix 34
AD7
B
259 274Right-handed alpha
Helix 35
AD8
C
5 16Right-handed alpha
Helix 36
AD9
C
19 24Right-handed alpha
Helix 37
AE1
C
29 38Right-handed alpha
Helix 38
AE2
C
44 56Right-handed alpha
Helix 39
AE3
C
58 64Right-handed alpha
Helix 40
AE4
C
71 86Right-handed alpha
Helix 41
AE5
C
88 99Right-handed alpha
Helix 42
AE6
C
102 115Right-handed alpha
Helix 43
AE7
C
123 137Right-handed alpha
Helix 44
AE8
C
141 152Right-handed alpha
Helix 45
AE9
C
153 155Right-handed 310
Helix 46
AF1
C
156 171Right-handed alpha
Helix 47
AF2
C
178 198Right-handed alpha
Helix 48
AF3
C
200 216Right-handed alpha
Helix 49
AF4
C
220 238Right-handed alpha
Helix 50
AF5
C
241 257Right-handed alpha
Helix 51
AF6
C
259 274Right-handed alpha
Helix 52
AF7
D
5 16Right-handed alpha
Helix 53
AF8
D
19 24Right-handed alpha
Helix 54
AF9
D
29 38Right-handed alpha
Helix 55
AG1
D
44 55Right-handed alpha
Helix 56
AG2
D
58 64Right-handed alpha
Helix 57
AG3
D
72 87Right-handed alpha
Helix 58
AG4
D
88 99Right-handed alpha
Helix 59
AG5
D
102 115Right-handed alpha
Helix 60
AG6
D
123 137Right-handed alpha
Helix 61
AG7
D
141 152Right-handed alpha
Helix 62
AG8
D
153 155Right-handed 310
Helix 63
AG9
D
156 171Right-handed alpha
Helix 64
AH1
D
178 198Right-handed alpha
Helix 65
AH2
D
200 216Right-handed alpha
Helix 66
AH3
D
220 237Right-handed alpha
Helix 67
AH4
D
243 257Right-handed alpha
Helix 68
AH5
D
259 272Right-handed alpha
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There are no sheets in PDB entry 4YV9
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il