Analysis of interatomic Contacts of Structural Units in PDB entry:
4YVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YVM entry

There are 2 chains in PDB entry 4YVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 24SER 232
B
 THR 24SER 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 4YVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 44Right-handed alpha
Helix 2
AA2
A
44 49Right-handed alpha
Helix 3
AA3
A
63 100Right-handed alpha
Helix 4
AA4
A
106 117Right-handed alpha
Helix 5
AA5
A
122 127Right-handed alpha
Helix 6
AA6
A
132 168Right-handed alpha
Helix 7
AA7
A
171 177Right-handed alpha
Helix 8
AA8
A
179 230Right-handed alpha
Helix 9
AA9
B
25 49Right-handed alpha
Helix 10
AB1
B
63 102Right-handed alpha
Helix 11
AB2
B
106 117Right-handed alpha
Helix 12
AB3
B
120 129Right-handed alpha
Helix 13
AB4
B
132 165Right-handed alpha
Helix 14
AB5
B
166 170Right-handed 310
Helix 15
AB6
B
171 176Right-handed alpha
Helix 16
AB7
B
179 229Right-handed alpha
Back to top of page
There are no sheets in PDB entry 4YVM
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il