Analysis of interatomic Contacts of Structural Units in PDB entry:
4YVQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YVQ entry

There are 2 chains in PDB entry 4YVQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 439LYS 527
C
 PRO 198ASP 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 4YVQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
439 441Right-handed 310
Helix 2
AA2
A
442 467Right-handed alpha
Helix 3
AA3
A
473 498Right-handed alpha
Helix 4
AA4
A
508 524Right-handed alpha
Helix 5
AA5
C
199 216Right-handed alpha
Helix 6
AA6
C
218 236Right-handed alpha
Helix 7
AA7
C
238 256Right-handed alpha
Helix 8
AA8
C
258 277Right-handed alpha
Helix 9
AA9
C
281 297Right-handed alpha
Helix 10
AB1
C
298 311Right-handed alpha
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There are no sheets in PDB entry 4YVQ
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il