Analysis of interatomic Contacts of Structural Units in PDB entry:
4YVS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4YVS entry

There are 15 chains in PDB entry 4YVS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 72	LEU 297
B	GLY 1	GLN 237
C	GLY 19	ARG 249
D	SER 72	LEU 297
G	SER 72	LEU 297
J	SER 72	LEU 297
M	SER 72	LEU 297
E	GLY 1	GLN 237
H	GLY 1	GLN 237
K	GLY 1	GLN 237
N	GLY 1	GLN 237
F	GLY 19	ARG 249
I	GLY 19	ARG 249
L	GLY 19	ARG 249
O	GLY 19	ARG 249

There are 70 helices in PDB entry 4YVS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	79	85	Right-handed alpha
Helix 2	AA2	A	117	124	Right-handed alpha
Helix 3	AA3	A	168	172	Right-handed 310
Helix 4	AA4	A	218	222	Right-handed 310
Helix 5	AA5	A	225	229	Right-handed 310
Helix 6	AA6	B	42	46	Right-handed 310
Helix 7	AA7	B	61	68	Right-handed 310
Helix 8	AA8	B	94	98	Right-handed 310
Helix 9	AA9	B	99	105	Right-handed alpha
Helix 10	AB1	B	106	108	Right-handed 310
Helix 11	AB2	B	146	151	Right-handed alpha
Helix 12	AB3	C	90	98	Right-handed alpha
Helix 13	AB4	C	147	152	Right-handed alpha
Helix 14	AB5	C	171	178	Right-handed 310
Helix 15	AB6	D	79	85	Right-handed alpha
Helix 16	AB7	D	117	124	Right-handed alpha
Helix 17	AB8	D	168	172	Right-handed 310
Helix 18	AB9	D	215	222	Right-handed 310
Helix 19	AC1	D	225	229	Right-handed 310
Helix 20	AC2	G	79	85	Right-handed alpha
Helix 21	AC3	G	118	124	Right-handed alpha
Helix 22	AC4	G	168	172	Right-handed 310
Helix 23	AC5	G	218	222	Right-handed 310
Helix 24	AC6	G	225	229	Right-handed 310
Helix 25	AC7	J	79	85	Right-handed alpha
Helix 26	AC8	J	118	124	Right-handed alpha
Helix 27	AC9	J	168	172	Right-handed 310
Helix 28	AD1	J	215	222	Right-handed 310
Helix 29	AD2	J	225	229	Right-handed 310
Helix 30	AD3	M	79	85	Right-handed alpha
Helix 31	AD4	M	118	124	Right-handed alpha
Helix 32	AD5	M	168	172	Right-handed 310
Helix 33	AD6	M	215	222	Right-handed 310
Helix 34	AD7	M	225	229	Right-handed 310
Helix 35	AD8	E	43	48	Right-handed alpha
Helix 36	AD9	E	61	68	Right-handed 310
Helix 37	AE1	E	94	98	Right-handed 310
Helix 38	AE2	E	99	106	Right-handed alpha
Helix 39	AE3	E	145	151	Right-handed alpha
Helix 40	AE4	H	43	48	Right-handed alpha
Helix 41	AE5	H	61	70	Right-handed 310
Helix 42	AE6	H	94	98	Right-handed 310
Helix 43	AE7	H	99	105	Right-handed alpha
Helix 44	AE8	H	106	108	Right-handed 310
Helix 45	AE9	H	145	151	Right-handed alpha
Helix 46	AF1	K	43	48	Right-handed alpha
Helix 47	AF2	K	64	70	Right-handed 310
Helix 48	AF3	K	94	98	Right-handed 310
Helix 49	AF4	K	99	105	Right-handed alpha
Helix 50	AF5	K	106	108	Right-handed 310
Helix 51	AF6	K	145	151	Right-handed alpha
Helix 52	AF7	N	43	48	Right-handed alpha
Helix 53	AF8	N	64	68	Right-handed 310
Helix 54	AF9	N	94	98	Right-handed 310
Helix 55	AG1	N	99	105	Right-handed alpha
Helix 56	AG2	N	106	108	Right-handed 310
Helix 57	AG3	N	145	151	Right-handed alpha
Helix 58	AG4	F	90	98	Right-handed alpha
Helix 59	AG5	F	147	152	Right-handed alpha
Helix 60	AG6	F	171	178	Right-handed 310
Helix 61	AG7	I	90	98	Right-handed alpha
Helix 62	AG8	I	147	152	Right-handed alpha
Helix 63	AG9	I	153	157	Right-handed 310
Helix 64	AH1	I	171	178	Right-handed 310
Helix 65	AH2	L	90	98	Right-handed alpha
Helix 66	AH3	L	147	152	Right-handed alpha
Helix 67	AH4	L	171	178	Right-handed 310
Helix 68	AH5	O	90	98	Right-handed alpha
Helix 69	AH6	O	147	152	Right-handed alpha
Helix 70	AH7	O	171	178	Right-handed 310

There are 46 sheets in PDB entry 4YVS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	95	first strand
Strand 2	A	247	260	anti-parallel
Strand 3	A	128	140	anti-parallel
Strand 4	A	188	192	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	95	first strand
Strand 2	A	247	260	anti-parallel
Strand 3	A	128	140	anti-parallel
Strand 4	A	201	202	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	110	first strand
Strand 2	A	232	235	anti-parallel
Strand 3	A	150	156	anti-parallel
Strand 4	A	178	182	anti-parallel
Strand 5	H	13	14	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	H	3	6	parallel
Strand 3	E	3	6	parallel
Strand 4	K	3	6	parallel
Strand 5	N	3	6	parallel
Strand 6	B	3	6	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	14	first strand
Strand 2	M	178	182	anti-parallel
Strand 3	M	150	156	anti-parallel
Strand 4	M	232	236	anti-parallel
Strand 5	M	107	110	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	52	first strand
Strand 2	B	211	220	anti-parallel
Strand 3	B	111	121	anti-parallel
Strand 4	B	164	172	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	74	first strand
Strand 2	B	211	220	anti-parallel
Strand 3	B	111	121	anti-parallel
Strand 4	B	225	226	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	87	first strand
Strand 2	B	193	198	anti-parallel
Strand 3	B	130	136	anti-parallel
Strand 4	B	154	158	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	33	first strand
Strand 2	C	190	195	parallel
Strand 3	C	106	111	anti-parallel
Strand 4	C	232	240	anti-parallel
Strand 5	C	64	71	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	159	first strand
Strand 2	C	78	82	anti-parallel
Strand 3	C	212	223	anti-parallel
Strand 4	C	119	128	anti-parallel
Strand 5	C	180	184	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	C	244	245	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	95	first strand
Strand 2	D	247	260	anti-parallel
Strand 3	D	128	140	anti-parallel
Strand 4	D	188	192	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	95	first strand
Strand 2	D	247	260	anti-parallel
Strand 3	D	128	140	anti-parallel
Strand 4	D	201	202	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	110	first strand
Strand 2	D	232	235	anti-parallel
Strand 3	D	150	156	anti-parallel
Strand 4	D	178	182	anti-parallel
Strand 5	K	13	14	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	88	95	first strand
Strand 2	G	247	260	anti-parallel
Strand 3	G	128	140	anti-parallel
Strand 4	G	188	192	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	88	95	first strand
Strand 2	G	247	260	anti-parallel
Strand 3	G	128	140	anti-parallel
Strand 4	G	201	202	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	107	110	first strand
Strand 2	G	232	235	anti-parallel
Strand 3	G	150	156	anti-parallel
Strand 4	G	178	182	anti-parallel
Strand 5	E	13	14	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	88	95	first strand
Strand 2	J	247	260	anti-parallel
Strand 3	J	128	140	anti-parallel
Strand 4	J	188	192	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	88	95	first strand
Strand 2	J	247	260	anti-parallel
Strand 3	J	128	140	anti-parallel
Strand 4	J	201	202	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	107	110	first strand
Strand 2	J	232	235	anti-parallel
Strand 3	J	150	156	anti-parallel
Strand 4	J	178	182	anti-parallel
Strand 5	N	13	14	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	88	95	first strand
Strand 2	M	247	260	anti-parallel
Strand 3	M	128	140	anti-parallel
Strand 4	M	188	192	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	88	95	first strand
Strand 2	M	247	260	anti-parallel
Strand 3	M	128	140	anti-parallel
Strand 4	M	201	202	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	52	first strand
Strand 2	E	211	220	anti-parallel
Strand 3	E	111	121	anti-parallel
Strand 4	E	164	173	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	70	74	first strand
Strand 2	E	211	220	anti-parallel
Strand 3	E	111	121	anti-parallel
Strand 4	E	225	226	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	82	87	first strand
Strand 2	E	193	198	anti-parallel
Strand 3	E	130	136	anti-parallel
Strand 4	E	154	158	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	51	52	first strand
Strand 2	H	211	220	anti-parallel
Strand 3	H	111	121	anti-parallel
Strand 4	H	164	172	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	71	74	first strand
Strand 2	H	211	220	anti-parallel
Strand 3	H	111	121	anti-parallel
Strand 4	H	225	226	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	82	87	first strand
Strand 2	H	193	198	anti-parallel
Strand 3	H	130	136	anti-parallel
Strand 4	H	154	158	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	51	52	first strand
Strand 2	K	211	220	anti-parallel
Strand 3	K	111	121	anti-parallel
Strand 4	K	164	173	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	71	74	first strand
Strand 2	K	211	220	anti-parallel
Strand 3	K	111	121	anti-parallel
Strand 4	K	225	226	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	82	87	first strand
Strand 2	K	193	198	anti-parallel
Strand 3	K	130	136	anti-parallel
Strand 4	K	154	158	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	51	52	first strand
Strand 2	N	211	220	anti-parallel
Strand 3	N	111	121	anti-parallel
Strand 4	N	164	173	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	70	74	first strand
Strand 2	N	211	220	anti-parallel
Strand 3	N	111	121	anti-parallel
Strand 4	N	225	226	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	82	87	first strand
Strand 2	N	193	198	anti-parallel
Strand 3	N	130	136	anti-parallel
Strand 4	N	154	158	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	33	first strand
Strand 2	F	190	195	parallel
Strand 3	F	106	111	anti-parallel
Strand 4	F	232	240	anti-parallel
Strand 5	F	64	71	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	159	first strand
Strand 2	F	78	82	anti-parallel
Strand 3	F	212	223	anti-parallel
Strand 4	F	119	128	anti-parallel
Strand 5	F	180	184	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	102	103	first strand
Strand 2	F	244	245	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	31	33	first strand
Strand 2	I	192	195	parallel
Strand 3	I	106	111	anti-parallel
Strand 4	I	232	240	anti-parallel
Strand 5	I	64	71	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	158	159	first strand
Strand 2	I	78	82	anti-parallel
Strand 3	I	212	218	anti-parallel
Strand 4	I	121	128	anti-parallel
Strand 5	I	180	184	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	102	103	first strand
Strand 2	I	244	245	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	32	33	first strand
Strand 2	L	190	195	parallel
Strand 3	L	106	111	anti-parallel
Strand 4	L	232	240	anti-parallel
Strand 5	L	64	71	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	158	159	first strand
Strand 2	L	78	82	anti-parallel
Strand 3	L	212	223	anti-parallel
Strand 4	L	119	128	anti-parallel
Strand 5	L	180	184	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	102	103	first strand
Strand 2	L	244	245	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	31	32	first strand
Strand 2	O	190	195	parallel
Strand 3	O	106	111	anti-parallel
Strand 4	O	232	240	anti-parallel
Strand 5	O	64	71	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	158	159	first strand
Strand 2	O	78	82	anti-parallel
Strand 3	O	212	218	anti-parallel
Strand 4	O	121	128	anti-parallel
Strand 5	O	180	184	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	102	103	first strand
Strand 2	O	244	245	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4YVS

Analysis of interatomic Contacts of Structural Units in PDB entry:
4YVS