Analysis of interatomic Contacts of Structural Units in PDB entry:
4YVW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4YVW entry

There are 15 chains in PDB entry 4YVW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	SER 72	THR 296
F	GLY 1	LEU 236
G	LEU 16	GLN 250
A	SER 72	THR 296
D	SER 72	THR 296
J	SER 72	THR 296
M	SER 72	THR 296
B	GLY 1	LEU 236
H	GLY 1	LEU 236
K	GLY 1	LEU 236
N	GLY 1	LEU 236
C	LEU 16	GLN 250
I	LEU 16	GLN 250
L	LEU 16	GLN 250
O	LEU 16	GLN 250

There are 73 helices in PDB entry 4YVW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	75	78	Right-handed 310
Helix 2	AA2	E	79	85	Right-handed alpha
Helix 3	AA3	E	118	124	Right-handed alpha
Helix 4	AA4	E	169	173	Right-handed 310
Helix 5	AA5	E	225	229	Right-handed 310
Helix 6	AA6	F	43	48	Right-handed alpha
Helix 7	AA7	F	64	68	Right-handed 310
Helix 8	AA8	F	94	98	Right-handed 310
Helix 9	AA9	F	99	105	Right-handed alpha
Helix 10	AB1	F	106	108	Right-handed 310
Helix 11	AB2	F	145	151	Right-handed alpha
Helix 12	AB3	G	33	37	Right-handed 310
Helix 13	AB4	G	82	86	Right-handed alpha
Helix 14	AB5	G	89	97	Right-handed alpha
Helix 15	AB6	G	147	151	Right-handed 310
Helix 16	AB7	G	171	178	Right-handed 310
Helix 17	AB8	A	75	78	Right-handed 310
Helix 18	AB9	A	79	85	Right-handed alpha
Helix 19	AC1	A	118	124	Right-handed alpha
Helix 20	AC2	A	225	229	Right-handed 310
Helix 21	AC3	D	75	78	Right-handed 310
Helix 22	AC4	D	79	85	Right-handed alpha
Helix 23	AC5	D	118	124	Right-handed alpha
Helix 24	AC6	D	169	173	Right-handed 310
Helix 25	AC7	D	225	229	Right-handed 310
Helix 26	AC8	J	75	78	Right-handed 310
Helix 27	AC9	J	79	85	Right-handed alpha
Helix 28	AD1	J	118	124	Right-handed alpha
Helix 29	AD2	J	169	173	Right-handed 310
Helix 30	AD3	J	225	229	Right-handed 310
Helix 31	AD4	M	75	78	Right-handed 310
Helix 32	AD5	M	79	85	Right-handed alpha
Helix 33	AD6	M	118	124	Right-handed alpha
Helix 34	AD7	M	169	173	Right-handed 310
Helix 35	AD8	M	225	229	Right-handed 310
Helix 36	AD9	B	43	48	Right-handed alpha
Helix 37	AE1	B	64	68	Right-handed 310
Helix 38	AE2	B	94	98	Right-handed 310
Helix 39	AE3	B	99	105	Right-handed alpha
Helix 40	AE4	B	106	108	Right-handed 310
Helix 41	AE5	B	145	150	Right-handed alpha
Helix 42	AE6	B	160	162	Right-handed 310
Helix 43	AE7	H	43	48	Right-handed alpha
Helix 44	AE8	H	64	68	Right-handed 310
Helix 45	AE9	H	94	98	Right-handed 310
Helix 46	AF1	H	99	105	Right-handed alpha
Helix 47	AF2	H	145	150	Right-handed alpha
Helix 48	AF3	K	43	48	Right-handed alpha
Helix 49	AF4	K	64	68	Right-handed 310
Helix 50	AF5	K	94	98	Right-handed 310
Helix 51	AF6	K	99	105	Right-handed alpha
Helix 52	AF7	K	145	150	Right-handed alpha
Helix 53	AF8	N	43	48	Right-handed alpha
Helix 54	AF9	N	64	68	Right-handed 310
Helix 55	AG1	N	94	98	Right-handed 310
Helix 56	AG2	N	99	105	Right-handed alpha
Helix 57	AG3	N	106	108	Right-handed 310
Helix 58	AG4	N	145	150	Right-handed alpha
Helix 59	AG5	C	82	86	Right-handed alpha
Helix 60	AG6	C	89	97	Right-handed alpha
Helix 61	AG7	C	171	178	Right-handed 310
Helix 62	AG8	I	82	86	Right-handed alpha
Helix 63	AG9	I	89	97	Right-handed alpha
Helix 64	AH1	I	162	166	Right-handed 310
Helix 65	AH2	I	171	178	Right-handed 310
Helix 66	AH3	L	82	86	Right-handed alpha
Helix 67	AH4	L	89	97	Right-handed alpha
Helix 68	AH5	L	147	151	Right-handed 310
Helix 69	AH6	L	171	178	Right-handed 310
Helix 70	AH7	O	82	86	Right-handed alpha
Helix 71	AH8	O	89	97	Right-handed alpha
Helix 72	AH9	O	147	151	Right-handed 310
Helix 73	AI1	O	171	178	Right-handed 310

There are 41 sheets in PDB entry 4YVW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	88	95	first strand
Strand 2	E	247	255	anti-parallel
Strand 3	E	133	140	anti-parallel
Strand 4	E	188	192	anti-parallel
Strand 5	F	22	23	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	106	110	first strand
Strand 2	E	232	237	anti-parallel
Strand 3	E	150	156	anti-parallel
Strand 4	E	178	182	anti-parallel
Strand 5	N	13	14	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	201	202	first strand
Strand 2	E	128	130	anti-parallel
Strand 3	E	259	260	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	6	first strand
Strand 2	K	2	6	parallel
Strand 3	H	2	6	parallel
Strand 4	B	2	6	parallel
Strand 5	N	2	6	parallel
Strand 6	F	2	6	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	14	first strand
Strand 2	J	178	182	anti-parallel
Strand 3	J	150	156	anti-parallel
Strand 4	J	232	237	anti-parallel
Strand 5	J	106	110	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	52	first strand
Strand 2	F	211	220	anti-parallel
Strand 3	F	70	74	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	52	first strand
Strand 2	F	211	220	anti-parallel
Strand 3	F	112	121	anti-parallel
Strand 4	F	164	173	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	81	87	first strand
Strand 2	F	193	198	anti-parallel
Strand 3	F	130	136	anti-parallel
Strand 4	F	154	158	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	78	81	first strand
Strand 2	G	213	223	anti-parallel
Strand 3	G	119	127	anti-parallel
Strand 4	G	180	184	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	190	195	first strand
Strand 2	G	105	112	anti-parallel
Strand 3	G	234	241	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	95	first strand
Strand 2	A	247	255	anti-parallel
Strand 3	A	133	140	anti-parallel
Strand 4	A	188	192	anti-parallel
Strand 5	B	22	23	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	110	first strand
Strand 2	A	232	237	anti-parallel
Strand 3	A	150	156	anti-parallel
Strand 4	A	178	182	anti-parallel
Strand 5	H	13	14	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	202	first strand
Strand 2	A	128	130	anti-parallel
Strand 3	A	259	260	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	95	first strand
Strand 2	D	247	255	anti-parallel
Strand 3	D	133	140	anti-parallel
Strand 4	D	188	192	anti-parallel
Strand 5	H	22	23	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	110	first strand
Strand 2	D	232	237	anti-parallel
Strand 3	D	150	156	anti-parallel
Strand 4	D	178	182	anti-parallel
Strand 5	K	13	14	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	202	first strand
Strand 2	D	128	130	anti-parallel
Strand 3	D	259	260	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	88	95	first strand
Strand 2	J	247	255	anti-parallel
Strand 3	J	133	140	anti-parallel
Strand 4	J	188	192	anti-parallel
Strand 5	K	22	23	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	201	202	first strand
Strand 2	J	128	130	anti-parallel
Strand 3	J	259	260	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	88	95	first strand
Strand 2	M	247	255	anti-parallel
Strand 3	M	133	140	anti-parallel
Strand 4	M	188	192	anti-parallel
Strand 5	N	22	23	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	106	110	first strand
Strand 2	M	232	237	anti-parallel
Strand 3	M	150	156	anti-parallel
Strand 4	M	178	182	anti-parallel
Strand 5	B	13	14	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	129	130	first strand
Strand 2	M	259	260	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	53	first strand
Strand 2	B	211	220	anti-parallel
Strand 3	B	70	74	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	53	first strand
Strand 2	B	211	220	anti-parallel
Strand 3	B	112	121	anti-parallel
Strand 4	B	164	173	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	87	first strand
Strand 2	B	193	198	anti-parallel
Strand 3	B	130	136	anti-parallel
Strand 4	B	154	158	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	51	52	first strand
Strand 2	H	211	220	anti-parallel
Strand 3	H	70	74	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	51	52	first strand
Strand 2	H	211	220	anti-parallel
Strand 3	H	112	121	anti-parallel
Strand 4	H	164	173	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	81	87	first strand
Strand 2	H	193	198	anti-parallel
Strand 3	H	130	136	anti-parallel
Strand 4	H	153	158	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	51	52	first strand
Strand 2	K	211	220	anti-parallel
Strand 3	K	111	121	anti-parallel
Strand 4	K	164	173	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	70	74	first strand
Strand 2	K	211	220	anti-parallel
Strand 3	K	111	121	anti-parallel
Strand 4	K	225	226	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	83	87	first strand
Strand 2	K	193	198	anti-parallel
Strand 3	K	130	136	anti-parallel
Strand 4	K	154	158	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	51	52	first strand
Strand 2	N	211	220	anti-parallel
Strand 3	N	70	74	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	51	52	first strand
Strand 2	N	211	220	anti-parallel
Strand 3	N	112	121	anti-parallel
Strand 4	N	165	173	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	81	87	first strand
Strand 2	N	193	198	anti-parallel
Strand 3	N	130	136	anti-parallel
Strand 4	N	153	158	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	234	241	anti-parallel
Strand 3	C	105	112	anti-parallel
Strand 4	C	190	195	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	81	first strand
Strand 2	C	213	223	anti-parallel
Strand 3	C	119	127	anti-parallel
Strand 4	C	180	184	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	64	65	first strand
Strand 2	I	234	241	anti-parallel
Strand 3	I	105	112	anti-parallel
Strand 4	I	190	195	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	78	81	first strand
Strand 2	I	213	223	anti-parallel
Strand 3	I	119	127	anti-parallel
Strand 4	I	180	184	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	31	33	first strand
Strand 2	L	190	195	parallel
Strand 3	L	105	112	anti-parallel
Strand 4	L	234	241	anti-parallel
Strand 5	L	64	65	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	78	81	first strand
Strand 2	L	213	223	anti-parallel
Strand 3	L	119	127	anti-parallel
Strand 4	L	180	184	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	31	33	first strand
Strand 2	O	190	195	parallel
Strand 3	O	105	112	anti-parallel
Strand 4	O	234	241	anti-parallel
Strand 5	O	64	65	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	78	81	first strand
Strand 2	O	213	223	anti-parallel
Strand 3	O	119	127	anti-parallel
Strand 4	O	180	184	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4YVW

Analysis of interatomic Contacts of Structural Units in PDB entry:
4YVW