Analysis of interatomic Contacts of Structural Units in PDB entry:
4YWE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4YWE entry

There are 3 chains in PDB entry 4YWE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 4	GLY 479
B	ALA 4	GLY 479
C	ALA 4	GLY 404

There are165 helices in PDB entry 4YWE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	56	Right-handed alpha
Helix 2	AA2	A	56	61	Right-handed alpha
Helix 3	AA3	A	62	80	Right-handed alpha
Helix 4	AA4	A	80	93	Right-handed alpha
Helix 5	AA5	A	95	117	Right-handed alpha
Helix 6	AA6	A	118	120	Right-handed 310
Helix 7	AA7	A	151	167	Right-handed alpha
Helix 8	AA8	A	179	193	Right-handed alpha
Helix 9	AA9	A	208	216	Right-handed alpha
Helix 10	AB1	A	227	239	Right-handed alpha
Helix 11	AB2	A	240	242	Right-handed 310
Helix 12	AB3	A	262	276	Right-handed alpha
Helix 13	AB4	A	277	280	Right-handed 310
Helix 14	AB5	A	294	308	Right-handed alpha
Helix 15	AB6	A	313	317	Right-handed 310
Helix 16	AB7	A	325	342	Right-handed alpha
Helix 17	AB8	A	375	380	Right-handed alpha
Helix 18	AB9	A	394	403	Right-handed alpha
Helix 19	AC1	A	417	428	Right-handed alpha
Helix 20	AC2	A	451	453	Right-handed 310
Helix 21	AC3	A	463	468	Right-handed alpha
Helix 22	AC4	B	39	55	Right-handed alpha
Helix 23	AC5	B	56	61	Right-handed alpha
Helix 24	AC6	B	62	80	Right-handed alpha
Helix 25	AC7	B	80	93	Right-handed alpha
Helix 26	AC8	B	95	115	Right-handed alpha
Helix 27	AC9	B	116	120	Right-handed 310
Helix 28	AD1	B	151	167	Right-handed alpha
Helix 29	AD2	B	179	193	Right-handed alpha
Helix 30	AD3	B	208	216	Right-handed alpha
Helix 31	AD4	B	227	239	Right-handed alpha
Helix 32	AD5	B	240	242	Right-handed 310
Helix 33	AD6	B	262	276	Right-handed alpha
Helix 34	AD7	B	277	280	Right-handed 310
Helix 35	AD8	B	294	309	Right-handed alpha
Helix 36	AD9	B	313	317	Right-handed 310
Helix 37	AE1	B	325	342	Right-handed alpha
Helix 38	AE2	B	375	380	Right-handed alpha
Helix 39	AE3	B	394	403	Right-handed alpha
Helix 40	AE4	B	417	428	Right-handed alpha
Helix 41	AE5	B	451	453	Right-handed 310
Helix 42	AE6	B	463	468	Right-handed alpha
Helix 43	AE7	C	39	56	Right-handed alpha
Helix 44	AE8	C	56	61	Right-handed alpha
Helix 45	AE9	C	62	80	Right-handed alpha
Helix 46	AF1	C	80	93	Right-handed alpha
Helix 47	AF2	C	95	117	Right-handed alpha
Helix 48	AF3	C	118	120	Right-handed 310
Helix 49	AF4	C	151	167	Right-handed alpha
Helix 50	AF5	C	179	193	Right-handed alpha
Helix 51	AF6	C	208	216	Right-handed alpha
Helix 52	AF7	C	227	240	Right-handed alpha
Helix 53	AF8	C	262	276	Right-handed alpha
Helix 54	AF9	C	277	280	Right-handed 310
Helix 55	AG1	C	294	308	Right-handed alpha
Helix 56	AG2	C	313	317	Right-handed 310
Helix 57	AG3	C	325	342	Right-handed alpha
Helix 58	AG4	C	375	380	Right-handed alpha
Helix 59	AG5	C	394	403	Right-handed alpha
Helix 60	AG6	C	417	428	Right-handed alpha
Helix 61	AG7	C	451	453	Right-handed 310
Helix 62	AG8	C	463	468	Right-handed alpha
Helix 63	AG9	D	39	56	Right-handed alpha
Helix 64	AH1	D	56	61	Right-handed alpha
Helix 65	AH2	D	62	79	Right-handed alpha
Helix 66	AH3	D	80	93	Right-handed alpha
Helix 67	AH4	D	95	117	Right-handed alpha
Helix 68	AH5	D	118	120	Right-handed 310
Helix 69	AH6	D	151	167	Right-handed alpha
Helix 70	AH7	D	179	193	Right-handed alpha
Helix 71	AH8	D	208	216	Right-handed alpha
Helix 72	AH9	D	227	239	Right-handed alpha
Helix 73	AI1	D	240	242	Right-handed 310
Helix 74	AI2	D	262	276	Right-handed alpha
Helix 75	AI3	D	277	280	Right-handed 310
Helix 76	AI4	D	294	308	Right-handed alpha
Helix 77	AI5	D	313	317	Right-handed 310
Helix 78	AI6	D	325	342	Right-handed alpha
Helix 79	AI7	D	375	380	Right-handed alpha
Helix 80	AI8	D	394	403	Right-handed alpha
Helix 81	AI9	D	417	428	Right-handed alpha
Helix 82	AJ1	D	463	468	Right-handed alpha
Helix 83	AJ2	E	39	56	Right-handed alpha
Helix 84	AJ3	E	56	61	Right-handed alpha
Helix 85	AJ4	E	62	80	Right-handed alpha
Helix 86	AJ5	E	80	93	Right-handed alpha
Helix 87	AJ6	E	95	117	Right-handed alpha
Helix 88	AJ7	E	118	120	Right-handed 310
Helix 89	AJ8	E	151	167	Right-handed alpha
Helix 90	AJ9	E	179	192	Right-handed alpha
Helix 91	AK1	E	208	215	Right-handed alpha
Helix 92	AK2	E	227	239	Right-handed alpha
Helix 93	AK3	E	240	242	Right-handed 310
Helix 94	AK4	E	262	276	Right-handed alpha
Helix 95	AK5	E	277	280	Right-handed 310
Helix 96	AK6	E	294	308	Right-handed alpha
Helix 97	AK7	E	313	317	Right-handed 310
Helix 98	AK8	E	325	342	Right-handed alpha
Helix 99	AK9	E	375	380	Right-handed alpha
Helix 100	AL1	E	394	403	Right-handed alpha
Helix 101	AL2	E	417	428	Right-handed alpha
Helix 102	AL3	E	451	453	Right-handed 310
Helix 103	AL4	E	463	468	Right-handed alpha
Helix 104	AL5	F	39	56	Right-handed alpha
Helix 105	AL6	F	56	61	Right-handed alpha
Helix 106	AL7	F	62	80	Right-handed alpha
Helix 107	AL8	F	80	93	Right-handed alpha
Helix 108	AL9	F	95	117	Right-handed alpha
Helix 109	AM1	F	118	120	Right-handed 310
Helix 110	AM2	F	151	167	Right-handed alpha
Helix 111	AM3	F	179	192	Right-handed alpha
Helix 112	AM4	F	208	215	Right-handed alpha
Helix 113	AM5	F	227	239	Right-handed alpha
Helix 114	AM6	F	240	242	Right-handed 310
Helix 115	AM7	F	262	276	Right-handed alpha
Helix 116	AM8	F	277	280	Right-handed 310
Helix 117	AM9	F	292	308	Right-handed alpha
Helix 118	AN1	F	313	317	Right-handed 310
Helix 119	AN2	F	325	342	Right-handed alpha
Helix 120	AN3	F	375	380	Right-handed alpha
Helix 121	AN4	F	394	403	Right-handed alpha
Helix 122	AN5	F	417	428	Right-handed alpha
Helix 123	AN6	F	451	453	Right-handed 310
Helix 124	AN7	F	463	468	Right-handed alpha
Helix 125	AN8	G	39	56	Right-handed alpha
Helix 126	AN9	G	56	61	Right-handed alpha
Helix 127	AO1	G	62	79	Right-handed alpha
Helix 128	AO2	G	80	93	Right-handed alpha
Helix 129	AO3	G	95	117	Right-handed alpha
Helix 130	AO4	G	118	120	Right-handed 310
Helix 131	AO5	G	151	166	Right-handed alpha
Helix 132	AO6	G	179	193	Right-handed alpha
Helix 133	AO7	G	208	216	Right-handed alpha
Helix 134	AO8	G	227	239	Right-handed alpha
Helix 135	AO9	G	240	242	Right-handed 310
Helix 136	AP1	G	262	276	Right-handed alpha
Helix 137	AP2	G	277	280	Right-handed 310
Helix 138	AP3	G	294	308	Right-handed alpha
Helix 139	AP4	G	313	317	Right-handed 310
Helix 140	AP5	G	325	342	Right-handed alpha
Helix 141	AP6	G	375	380	Right-handed alpha
Helix 142	AP7	G	394	403	Right-handed alpha
Helix 143	AP8	G	417	428	Right-handed alpha
Helix 144	AP9	G	451	453	Right-handed 310
Helix 145	AQ1	G	463	468	Right-handed alpha
Helix 146	AQ2	H	39	56	Right-handed alpha
Helix 147	AQ3	H	56	61	Right-handed alpha
Helix 148	AQ4	H	62	80	Right-handed alpha
Helix 149	AQ5	H	80	93	Right-handed alpha
Helix 150	AQ6	H	95	115	Right-handed alpha
Helix 151	AQ7	H	116	120	Right-handed 310
Helix 152	AQ8	H	151	167	Right-handed alpha
Helix 153	AQ9	H	179	192	Right-handed alpha
Helix 154	AR1	H	208	216	Right-handed alpha
Helix 155	AR2	H	227	239	Right-handed alpha
Helix 156	AR3	H	240	242	Right-handed 310
Helix 157	AR4	H	262	276	Right-handed alpha
Helix 158	AR5	H	277	280	Right-handed 310
Helix 159	AR6	H	294	309	Right-handed alpha
Helix 160	AR7	H	325	342	Right-handed alpha
Helix 161	AR8	H	375	380	Right-handed alpha
Helix 162	AR9	H	394	403	Right-handed alpha
Helix 163	AS1	H	417	428	Right-handed alpha
Helix 164	AS2	H	451	453	Right-handed 310
Helix 165	AS3	H	463	468	Right-handed alpha

There are 37 sheets in PDB entry 4YWE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	8	first strand
Strand 2	A	11	13	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	24	first strand
Strand 2	A	31	36	anti-parallel

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There are 20 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	349	first strand
Strand 2	B	366	368	anti-parallel
Strand 3	B	386	392	parallel
Strand 4	B	287	291	parallel
Strand 5	B	254	257	parallel
Strand 6	B	410	414	parallel
Strand 7	B	432	435	parallel
Strand 8	A	469	477	parallel
Strand 9	A	131	139	anti-parallel
Strand 10	A	122	125	anti-parallel
Strand 11	C	122	125	anti-parallel
Strand 12	C	131	139	anti-parallel
Strand 13	C	469	477	anti-parallel
Strand 14	D	432	435	parallel
Strand 15	D	410	414	parallel
Strand 16	D	253	257	parallel
Strand 17	D	285	291	parallel
Strand 18	D	386	392	parallel
Strand 19	D	366	368	parallel
Strand 20	D	346	349	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	201	first strand
Strand 2	A	169	174	parallel
Strand 3	A	142	147	parallel
Strand 4	A	221	225	parallel
Strand 5	A	245	248	parallel
Strand 6	A	455	456	anti-parallel

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There are 20 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	349	first strand
Strand 2	A	366	368	anti-parallel
Strand 3	A	386	392	parallel
Strand 4	A	285	291	parallel
Strand 5	A	253	257	parallel
Strand 6	A	410	414	parallel
Strand 7	A	432	435	parallel
Strand 8	B	469	477	parallel
Strand 9	B	131	139	anti-parallel
Strand 10	B	122	125	anti-parallel
Strand 11	D	122	125	anti-parallel
Strand 12	D	131	139	anti-parallel
Strand 13	D	469	477	anti-parallel
Strand 14	C	432	435	parallel
Strand 15	C	410	414	parallel
Strand 16	C	253	257	parallel
Strand 17	C	285	291	parallel
Strand 18	C	386	392	parallel
Strand 19	C	366	368	parallel
Strand 20	C	346	349	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	311	first strand
Strand 2	A	351	352	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	8	first strand
Strand 2	B	11	13	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	24	first strand
Strand 2	B	31	36	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	201	first strand
Strand 2	B	169	174	parallel
Strand 3	B	142	147	parallel
Strand 4	B	221	225	parallel
Strand 5	B	245	248	parallel
Strand 6	B	455	456	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	311	first strand
Strand 2	B	351	352	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	8	first strand
Strand 2	C	11	13	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	24	first strand
Strand 2	C	31	36	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	201	first strand
Strand 2	C	169	174	parallel
Strand 3	C	142	147	parallel
Strand 4	C	221	225	parallel
Strand 5	C	245	248	parallel
Strand 6	C	455	456	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	311	first strand
Strand 2	C	351	352	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	8	first strand
Strand 2	D	11	13	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	24	first strand
Strand 2	D	31	35	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	201	first strand
Strand 2	D	169	174	parallel
Strand 3	D	142	147	parallel
Strand 4	D	221	225	parallel
Strand 5	D	245	248	parallel
Strand 6	D	455	456	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	310	311	first strand
Strand 2	D	351	352	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	408	first strand
Strand 2	D	451	452	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	8	first strand
Strand 2	E	11	13	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	24	first strand
Strand 2	E	31	36	anti-parallel

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There are 20 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	346	349	first strand
Strand 2	F	366	368	anti-parallel
Strand 3	F	386	392	parallel
Strand 4	F	285	291	parallel
Strand 5	F	253	257	parallel
Strand 6	F	410	414	parallel
Strand 7	F	432	435	parallel
Strand 8	E	469	477	parallel
Strand 9	E	131	139	anti-parallel
Strand 10	E	122	125	anti-parallel
Strand 11	G	122	125	anti-parallel
Strand 12	G	131	139	anti-parallel
Strand 13	G	469	477	anti-parallel
Strand 14	H	432	435	parallel
Strand 15	H	410	414	parallel
Strand 16	H	253	257	parallel
Strand 17	H	285	291	parallel
Strand 18	H	386	392	parallel
Strand 19	H	366	368	parallel
Strand 20	H	346	349	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	199	201	first strand
Strand 2	E	169	174	parallel
Strand 3	E	142	147	parallel
Strand 4	E	221	225	parallel
Strand 5	E	245	248	parallel
Strand 6	E	455	456	anti-parallel

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There are 20 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	346	349	first strand
Strand 2	E	366	368	anti-parallel
Strand 3	E	386	392	parallel
Strand 4	E	285	291	parallel
Strand 5	E	253	257	parallel
Strand 6	E	410	414	parallel
Strand 7	E	432	435	parallel
Strand 8	F	469	477	parallel
Strand 9	F	131	139	anti-parallel
Strand 10	F	122	125	anti-parallel
Strand 11	H	122	125	anti-parallel
Strand 12	H	131	139	anti-parallel
Strand 13	H	469	477	anti-parallel
Strand 14	G	432	435	parallel
Strand 15	G	410	414	parallel
Strand 16	G	253	257	parallel
Strand 17	G	285	291	parallel
Strand 18	G	386	392	parallel
Strand 19	G	366	368	parallel
Strand 20	G	346	349	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	310	311	first strand
Strand 2	E	351	352	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	8	first strand
Strand 2	F	11	13	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	24	first strand
Strand 2	F	31	36	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	199	201	first strand
Strand 2	F	169	174	parallel
Strand 3	F	142	147	parallel
Strand 4	F	221	225	parallel
Strand 5	F	245	248	parallel
Strand 6	F	455	456	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	310	311	first strand
Strand 2	F	351	352	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	8	first strand
Strand 2	G	11	13	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	20	24	first strand
Strand 2	G	31	36	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	199	201	first strand
Strand 2	G	169	174	parallel
Strand 3	G	142	147	parallel
Strand 4	G	221	225	parallel
Strand 5	G	245	248	parallel
Strand 6	G	455	456	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	310	311	first strand
Strand 2	G	351	352	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	8	first strand
Strand 2	H	11	13	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	24	first strand
Strand 2	H	31	36	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	199	201	first strand
Strand 2	H	169	174	parallel
Strand 3	H	142	147	parallel
Strand 4	H	221	225	parallel
Strand 5	H	245	248	parallel
Strand 6	H	455	456	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	310	311	first strand
Strand 2	H	351	352	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4YWE

Analysis of interatomic Contacts of Structural Units in PDB entry:
4YWE