Analysis of interatomic Contacts of Structural Units in PDB entry:
4YWJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YWJ entry

There are 2 chains in PDB entry 4YWJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 268
B
 MET 1ARG 268
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4YWJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 23Right-handed alpha
Helix 2
AA2
A
45 50Right-handed alpha
Helix 3
AA3
A
62 67Right-handed alpha
Helix 4
AA4
A
78 92Right-handed alpha
Helix 5
AA5
A
104 115Right-handed alpha
Helix 6
AA6
A
127 145Right-handed alpha
Helix 7
AA7
A
146 148Right-handed 310
Helix 8
AA8
A
165 179Right-handed alpha
Helix 9
AA9
A
182 186Right-handed alpha
Helix 10
AB1
A
237 251Right-handed alpha
Helix 11
AB2
A
260 265Right-handed alpha
Helix 12
AB3
B
11 23Right-handed alpha
Helix 13
AB4
B
45 50Right-handed alpha
Helix 14
AB5
B
62 67Right-handed 310
Helix 15
AB6
B
78 92Right-handed alpha
Helix 16
AB7
B
104 115Right-handed alpha
Helix 17
AB8
B
127 145Right-handed alpha
Helix 18
AB9
B
146 148Right-handed 310
Helix 19
AC1
B
165 179Right-handed alpha
Helix 20
AC2
B
182 186Right-handed alpha
Helix 21
AC3
B
237 251Right-handed alpha
Helix 22
AC4
B
260 265Right-handed alpha
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There are 3 sheets in PDB entry 4YWJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
28 34parallel
Strand 3
A
2 7parallel
Strand 4
A
72 75parallel
Strand 5
A
95 98parallel
Strand 6
A
119 122parallel
Strand 7
A
257 259parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
203 209parallel
Strand 3
A
149 156parallel
Strand 4
A
215 223anti-parallel
Strand 5
A
226 234anti-parallel
Strand 6
B
226 234anti-parallel
Strand 7
B
216 223anti-parallel
Strand 8
B
149 156anti-parallel
Strand 9
B
203 209parallel
Strand 10
B
187 188parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 60first strand
Strand 2
B
28 34parallel
Strand 3
B
2 7parallel
Strand 4
B
72 75parallel
Strand 5
B
95 98parallel
Strand 6
B
119 122parallel
Strand 7
B
257 259parallel
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