Analysis of interatomic Contacts of Structural Units in PDB entry:
4YWN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YWN entry

There are 2 chains in PDB entry 4YWN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 8ASP 145
B
 SER 12VAL 152
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 4YWN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 17Right-handed alpha
Helix 2
AA2
A
63 68Right-handed alpha
Helix 3
AA3
A
83 95Right-handed alpha
Helix 4
AA4
B
13 17Right-handed alpha
Helix 5
AA5
B
63 68Right-handed alpha
Helix 6
AA6
B
83 95Right-handed alpha
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There are 4 sheets in PDB entry 4YWN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
B
132 144anti-parallel
Strand 3
B
117 129anti-parallel
Strand 4
B
73 80anti-parallel
Strand 5
B
23 31anti-parallel
Strand 6
B
34 47anti-parallel
Strand 7
B
52 58anti-parallel
Strand 8
B
132 144anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 31first strand
Strand 2
A
34 47anti-parallel
Strand 3
A
52 58anti-parallel
Strand 4
A
132 144anti-parallel
Strand 5
A
117 129anti-parallel
Strand 6
A
73 80anti-parallel
Strand 7
A
23 31anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 104first strand
Strand 2
A
110 112anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 104first strand
Strand 2
B
110 112anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il