Analysis of interatomic Contacts of Structural Units in PDB entry:
4YWU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YWU entry

There are 2 chains in PDB entry 4YWU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ASN 456
B
 ALA 2ASN 456
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 4YWU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 42Right-handed alpha
Helix 2
AA2
A
44 62Right-handed alpha
Helix 3
AA3
A
62 75Right-handed alpha
Helix 4
AA4
A
77 103Right-handed alpha
Helix 5
AA5
A
133 149Right-handed alpha
Helix 6
AA6
A
160 174Right-handed alpha
Helix 7
AA7
A
187 197Right-handed alpha
Helix 8
AA8
A
208 222Right-handed alpha
Helix 9
AA9
A
243 257Right-handed alpha
Helix 10
AB1
A
258 261Right-handed 310
Helix 11
AB2
A
273 289Right-handed alpha
Helix 12
AB3
A
307 324Right-handed alpha
Helix 13
AB4
A
354 359Right-handed 310
Helix 14
AB5
A
373 383Right-handed alpha
Helix 15
AB6
A
396 405Right-handed alpha
Helix 16
AB7
A
438 444Right-handed alpha
Helix 17
AB8
A
445 447Right-handed 310
Helix 18
AB9
B
21 42Right-handed alpha
Helix 19
AC1
B
44 62Right-handed alpha
Helix 20
AC2
B
62 75Right-handed alpha
Helix 21
AC3
B
77 104Right-handed alpha
Helix 22
AC4
B
133 149Right-handed alpha
Helix 23
AC5
B
160 174Right-handed alpha
Helix 24
AC6
B
187 197Right-handed alpha
Helix 25
AC7
B
208 222Right-handed alpha
Helix 26
AC8
B
243 257Right-handed alpha
Helix 27
AC9
B
258 261Right-handed 310
Helix 28
AD1
B
275 288Right-handed alpha
Helix 29
AD2
B
307 324Right-handed alpha
Helix 30
AD3
B
354 359Right-handed 310
Helix 31
AD4
B
373 383Right-handed alpha
Helix 32
AD5
B
396 405Right-handed alpha
Helix 33
AD6
B
438 444Right-handed alpha
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There are 8 sheets in PDB entry 4YWU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
13 17anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 108first strand
Strand 2
A
113 120anti-parallel
Strand 3
A
448 455anti-parallel
Strand 4
B
411 414parallel
Strand 5
B
391 393parallel
Strand 6
B
235 238parallel
Strand 7
B
268 272parallel
Strand 8
B
365 371parallel
Strand 9
B
345 348parallel
Strand 10
B
327 330anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 183first strand
Strand 2
A
152 155parallel
Strand 3
A
124 128parallel
Strand 4
A
200 206parallel
Strand 5
A
225 229parallel
Strand 6
A
433 434anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 330first strand
Strand 2
A
345 348anti-parallel
Strand 3
A
365 371parallel
Strand 4
A
268 272parallel
Strand 5
A
235 238parallel
Strand 6
A
391 393parallel
Strand 7
A
411 414parallel
Strand 8
B
447 455parallel
Strand 9
B
113 121anti-parallel
Strand 10
B
106 108anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 387first strand
Strand 2
A
429 430anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 6first strand
Strand 2
B
13 17anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 183first strand
Strand 2
B
152 155parallel
Strand 3
B
124 128parallel
Strand 4
B
200 206parallel
Strand 5
B
225 229parallel
Strand 6
B
433 434anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
386 387first strand
Strand 2
B
429 430anti-parallel
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