Analysis of interatomic Contacts of Structural Units in PDB entry:
4YX6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4YX6 entry

There are 2 chains in PDB entry 4YX6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 18PRO 543
B
 TRP 19GLN 545
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 53 helices in PDB entry 4YX6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 40Right-handed alpha
Helix 2
AA2
A
85 89Right-handed 310
Helix 3
AA3
A
91 99Right-handed alpha
Helix 4
AA4
A
115 125Right-handed alpha
Helix 5
AA5
A
137 152Right-handed alpha
Helix 6
AA6
A
167 181Right-handed alpha
Helix 7
AA7
A
195 205Right-handed alpha
Helix 8
AA8
A
226 235Right-handed alpha
Helix 9
AA9
A
238 248Right-handed alpha
Helix 10
AB1
A
252 260Right-handed alpha
Helix 11
AB2
A
282 302Right-handed alpha
Helix 12
AB3
A
317 327Right-handed alpha
Helix 13
AB4
A
337 341Right-handed 310
Helix 14
AB5
A
347 355Right-handed alpha
Helix 15
AB6
A
370 374Right-handed 310
Helix 16
AB7
A
385 400Right-handed alpha
Helix 17
AB8
A
402 406Right-handed 310
Helix 18
AB9
A
407 418Right-handed alpha
Helix 19
AC1
A
422 438Right-handed alpha
Helix 20
AC2
A
438 445Right-handed alpha
Helix 21
AC3
A
448 471Right-handed alpha
Helix 22
AC4
A
475 479Right-handed 310
Helix 23
AC5
A
484 495Right-handed alpha
Helix 24
AC6
A
497 505Right-handed 310
Helix 25
AC7
A
506 530Right-handed alpha
Helix 26
AC8
A
535 539Right-handed 310
Helix 27
AC9
B
31 41Right-handed alpha
Helix 28
AD1
B
85 89Right-handed 310
Helix 29
AD2
B
91 99Right-handed alpha
Helix 30
AD3
B
115 125Right-handed alpha
Helix 31
AD4
B
137 152Right-handed alpha
Helix 32
AD5
B
167 181Right-handed alpha
Helix 33
AD6
B
195 205Right-handed alpha
Helix 34
AD7
B
226 235Right-handed alpha
Helix 35
AD8
B
238 248Right-handed alpha
Helix 36
AD9
B
252 259Right-handed alpha
Helix 37
AE1
B
282 302Right-handed alpha
Helix 38
AE2
B
317 327Right-handed alpha
Helix 39
AE3
B
335 340Right-handed alpha
Helix 40
AE4
B
347 355Right-handed alpha
Helix 41
AE5
B
356 357Right-handed 310
Helix 42
AE6
B
358 360Right-handed 310
Helix 43
AE7
B
370 374Right-handed 310
Helix 44
AE8
B
385 400Right-handed alpha
Helix 45
AE9
B
402 406Right-handed 310
Helix 46
AF1
B
407 418Right-handed alpha
Helix 47
AF2
B
422 433Right-handed alpha
Helix 48
AF3
B
449 471Right-handed alpha
Helix 49
AF4
B
475 479Right-handed 310
Helix 50
AF5
B
484 495Right-handed alpha
Helix 51
AF6
B
497 505Right-handed 310
Helix 52
AF7
B
506 530Right-handed alpha
Helix 53
AF8
B
535 539Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 4YX6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
75 76anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 59first strand
Strand 2
A
46 51anti-parallel
Strand 3
A
79 81anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 106first strand
Strand 2
A
128 131parallel
Strand 3
A
158 162parallel
Strand 4
A
185 189parallel
Strand 5
A
219 224parallel
Strand 6
A
267 271parallel
Strand 7
A
308 312parallel
Strand 8
A
332 334parallel
Strand 9
A
104 106parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
214 216anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 277first strand
Strand 2
A
376 380anti-parallel
Strand 3
A
362 366anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
46 49anti-parallel
Strand 3
B
79 81anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 106first strand
Strand 2
B
128 131parallel
Strand 3
B
158 162parallel
Strand 4
B
185 189parallel
Strand 5
B
219 224parallel
Strand 6
B
267 271parallel
Strand 7
B
308 312parallel
Strand 8
B
332 334parallel
Strand 9
B
104 106parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 208first strand
Strand 2
B
214 216anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 277first strand
Strand 2
B
376 380anti-parallel
Strand 3
B
362 366anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il